Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   UC35_RS09840 Genome accession   NZ_CP010951
Coordinates   2035417..2036481 (-) Length   354 a.a.
NCBI ID   WP_061498681.1    Uniprot ID   A0A127JTA4
Organism   Ramlibacter tataouinensis strain 5-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2030417..2041481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC35_RS09815 (UC35_09825) sucD 2030931..2031824 (-) 894 WP_061498671.1 succinate--CoA ligase subunit alpha -
  UC35_RS09820 (UC35_09830) sucC 2031834..2033000 (-) 1167 WP_061498674.1 ADP-forming succinate--CoA ligase subunit beta -
  UC35_RS09825 (UC35_09835) argC 2033164..2034084 (+) 921 WP_061498676.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  UC35_RS09830 (UC35_09840) - 2034085..2034882 (-) 798 WP_227820515.1 alpha/beta fold hydrolase -
  UC35_RS09835 (UC35_09845) recX 2034959..2035411 (-) 453 WP_061503772.1 recombination regulator RecX -
  UC35_RS09840 (UC35_09850) recA 2035417..2036481 (-) 1065 WP_061498681.1 recombinase RecA Machinery gene
  UC35_RS09845 (UC35_09855) - 2036626..2037126 (+) 501 WP_061498684.1 MarR family winged helix-turn-helix transcriptional regulator -
  UC35_RS09850 (UC35_09860) - 2037249..2037923 (+) 675 WP_061498687.1 response regulator transcription factor -
  UC35_RS09855 (UC35_09865) - 2037982..2039457 (+) 1476 WP_061498691.1 sensor histidine kinase -
  UC35_RS09860 (UC35_09870) - 2039461..2040126 (-) 666 WP_061498694.1 glutathione S-transferase family protein -
  UC35_RS09865 (UC35_09875) - 2040152..2040808 (-) 657 WP_061498697.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38003.64 Da        Isoelectric Point: 5.3713

>NTDB_id=140854 UC35_RS09840 WP_061498681.1 2035417..2036481(-) (recA) [Ramlibacter tataouinensis strain 5-10]
MDAQVKGSRIAAADSEKAKALQAALAQIEKQFGKGTIMRLGEGEKIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQRQAGTCAFVDAEHALDVQYAQKLGVNLPDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRT
GTIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISRHGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREF
LRENPELAREIENKVRESLGIPLLPADAGEEAGK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=140854 UC35_RS09840 WP_061498681.1 2035417..2036481(-) (recA) [Ramlibacter tataouinensis strain 5-10]
ATGGATGCTCAAGTCAAGGGAAGCCGCATCGCCGCCGCCGACAGCGAAAAAGCCAAGGCCCTGCAGGCCGCGCTGGCGCA
GATCGAGAAGCAGTTCGGCAAGGGCACGATCATGCGCCTGGGCGAAGGCGAGAAGATCGAGGACATCCAGGTGGTCTCCA
CCGGCTCGCTCGGGCTGGACATCGCCCTCGGCGTGGGCGGCCTGCCGCGCGGCCGGGTGATCGAGATCTACGGGCCGGAA
TCCTCGGGCAAGACCACGCTGACGCTGCAGGTCATCGCCGAGATGCAGCGCCAGGCCGGCACCTGCGCTTTTGTCGATGC
CGAGCACGCGCTGGACGTGCAGTACGCGCAAAAGCTCGGCGTGAACCTGCCCGACCTGCTGATCTCGCAGCCCGACACCG
GCGAGCAGGCGCTGGAGATCGTCGACAGCCTGGTGCGCTCCGGCGCGGTGGACCTGATCGTGGTCGACTCGGTCGCCGCG
CTCACCCCCAAGGCCGAGATCGAAGGCGAGATGGGCGACTCGCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCTTCGGTGCGGCTGGACATCCGCCGCACC
GGCACCATCAAGAAGGGCGAGGAAGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCTCCCTT
CAAGACCGCGGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCCACGGCGAAATCATCGACATGGGCGTCAACGCCC
GCATCCTGGAGAAGTCCGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCGGAACTGGCCAGGGAAATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTGCCGGCCGA
CGCTGGCGAAGAAGCTGGCAAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127JTA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.493

94.633

0.771
  recA Pseudomonas stutzeri DSM 10701

73.006

92.09

0.672
  recA Neisseria gonorrhoeae MS11

71.341

92.655

0.661
  recA Neisseria gonorrhoeae strain FA1090

71.341

92.655

0.661
  recA Neisseria gonorrhoeae MS11

71.341

92.655

0.661
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.517

92.938

0.655
  recA Vibrio cholerae strain A1552

70.517

92.938

0.655
  recA Acinetobacter baumannii D1279779

70.859

92.09

0.653
  recA Acinetobacter baylyi ADP1

70.859

92.09

0.653
  recA Glaesserella parasuis strain SC1401

70.988

91.525

0.65
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

92.938

0.633
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.579

95.198

0.624
  recA Helicobacter pylori strain NCTC11637

65.152

93.22

0.607
  recA Helicobacter pylori 26695

65.152

93.22

0.607
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

92.373

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

62.275

94.35

0.588
  recA Streptococcus mutans UA159

60

96.045

0.576
  recA Streptococcus pyogenes NZ131

61.398

92.938

0.571
  recA Streptococcus pneumoniae Rx1

60.423

93.503

0.565
  recA Streptococcus pneumoniae R6

60.423

93.503

0.565
  recA Streptococcus pneumoniae TIGR4

60.423

93.503

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.423

93.503

0.565
  recA Streptococcus pneumoniae D39

60.423

93.503

0.565
  recA Streptococcus mitis NCTC 12261

60.121

93.503

0.562
  recA Streptococcus mitis SK321

60.121

93.503

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551

Multiple sequence alignment