Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PF1751_RS05785 Genome accession   NZ_CP010896
Coordinates   1298240..1299298 (+) Length   352 a.a.
NCBI ID   WP_003189042.1    Uniprot ID   A0A7Y7ZLK5
Organism   Pseudomonas simiae strain PCL1751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1283643..1299298 1298240..1299298 within 0


Gene organization within MGE regions


Location: 1283643..1299298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF1751_RS05670 (PF1751_v1c11170) - 1283643..1284131 (-) 489 WP_010212724.1 Panacea domain-containing protein -
  PF1751_RS05675 (PF1751_v1c11180) - 1284399..1285133 (+) 735 WP_010212723.1 LexA family transcriptional regulator -
  PF1751_RS29165 - 1285283..1285480 (+) 198 WP_021492473.1 hypothetical protein -
  PF1751_RS05685 (PF1751_v1c11190) - 1285731..1286075 (+) 345 WP_010212721.1 phage holin family protein -
  PF1751_RS05690 (PF1751_v1c11200) - 1286097..1286612 (+) 516 WP_010212719.1 hypothetical protein -
  PF1751_RS05695 (PF1751_v1c11210) - 1286616..1287227 (+) 612 WP_010212718.1 phage baseplate assembly protein V -
  PF1751_RS05700 (PF1751_v1c11220) - 1287237..1287569 (+) 333 WP_010212717.1 phage baseplate protein -
  PF1751_RS05705 (PF1751_v1c11230) - 1287566..1288561 (+) 996 WP_044286706.1 baseplate J/gp47 family protein -
  PF1751_RS05710 (PF1751_v1c11240) - 1288558..1289196 (+) 639 WP_021492468.1 phage tail protein I -
  PF1751_RS05715 (PF1751_v1c11250) - 1289193..1289732 (+) 540 WP_044286708.1 tail fiber protein -
  PF1751_RS05720 (PF1751_v1c11260) - 1289801..1290553 (+) 753 WP_021492466.1 hypothetical protein -
  PF1751_RS05725 (PF1751_v1c11270) - 1290563..1290799 (+) 237 WP_021492465.1 tail fiber assembly protein -
  PF1751_RS29180 (PF1751_v1c11280) - 1290885..1291058 (+) 174 WP_021492464.1 hypothetical protein -
  PF1751_RS05730 (PF1751_v1c11290) - 1291061..1292227 (+) 1167 WP_021492463.1 tail protein -
  PF1751_RS05735 (PF1751_v1c11300) - 1292227..1292733 (+) 507 WP_010212707.1 phage major tail tube protein -
  PF1751_RS05740 (PF1751_v1c11310) - 1292786..1293358 (+) 573 WP_010212706.1 phage tail assembly protein -
  PF1751_RS29620 - 1293355..1293480 (+) 126 WP_010212704.1 hypothetical protein -
  PF1751_RS05750 (PF1751_v1c11320) - 1293486..1294946 (+) 1461 WP_044286710.1 tail tape measure protein -
  PF1751_RS05755 (PF1751_v1c11330) - 1294946..1295329 (+) 384 WP_010212701.1 phage tail protein -
  PF1751_RS05760 (PF1751_v1c11340) - 1295322..1295534 (+) 213 WP_010212700.1 tail protein X -
  PF1751_RS05765 (PF1751_v1c11350) - 1295544..1296551 (+) 1008 WP_044286711.1 contractile injection system protein, VgrG/Pvc8 family -
  PF1751_RS05770 (PF1751_v1c11360) - 1296558..1297115 (+) 558 WP_010212696.1 glycoside hydrolase family 19 protein -
  PF1751_RS05775 (PF1751_v1c11370) - 1297079..1297573 (+) 495 WP_010212694.1 lysis system i-spanin subunit Rz -
  PF1751_RS05780 (PF1751_v1c11380) - 1297655..1298155 (+) 501 WP_010212691.1 CinA family protein -
  PF1751_RS05785 (PF1751_v1c11390) recA 1298240..1299298 (+) 1059 WP_003189042.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37580.12 Da        Isoelectric Point: 5.3036

>NTDB_id=140689 PF1751_RS05785 WP_003189042.1 1298240..1299298(+) (recA) [Pseudomonas simiae strain PCL1751]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=140689 PF1751_RS05785 WP_003189042.1 1298240..1299298(+) (recA) [Pseudomonas simiae strain PCL1751]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTCATTGCC
CAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGACCCTGAATACGCCGGCAAACTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTGCCTAAGGCTGAAATCGAAGGCGAAATGGGTGAT
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAAGAAGGTGACGAGGTTGTGGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGTTGCACGGTTTCGTCGAGAAATCGGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGACATTGCTGCCACACTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCGCCGCTCCAGACGTGAAAGCTGCCGCCAACCGCGAGCCGGTTGAAGAAGTGGAAGA
AGCTGATACTGACATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7ZLK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.5

100

0.875
  recA Acinetobacter baylyi ADP1

75

97.727

0.733
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

93.182

0.699
  recA Vibrio cholerae strain A1552

75

93.182

0.699
  recA Glaesserella parasuis strain SC1401

69.034

100

0.69
  recA Ralstonia pseudosolanacearum GMI1000

70.149

95.17

0.668
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.659

100

0.597
  recA Helicobacter pylori 26695

59.091

100

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus mitis SK321

54.83

100

0.548
  recA Streptococcus pyogenes NZ131

58.232

93.182

0.543
  recA Streptococcus pneumoniae D39

58.589

92.614

0.543
  recA Streptococcus pneumoniae TIGR4

58.589

92.614

0.543
  recA Streptococcus pneumoniae Rx1

58.589

92.614

0.543
  recA Streptococcus pneumoniae R6

58.589

92.614

0.543
  recA Streptococcus mitis NCTC 12261

58.824

91.761

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

91.193

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

92.614

0.526

Multiple sequence alignment