Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | TO66_RS06295 | Genome accession | NZ_CP010892 |
| Coordinates | 1396088..1397140 (+) | Length | 350 a.a. |
| NCBI ID | WP_044461523.1 | Uniprot ID | A0A0C5EFV5 |
| Organism | Pseudomonas sp. MRSN 12121 strain MRSN12121 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1338800..1397140 | 1396088..1397140 | within | 0 |
Gene organization within MGE regions
Location: 1338800..1397140
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TO66_RS05980 (TO66_05970) | dnaE | 1338800..1342321 (+) | 3522 | WP_044461464.1 | DNA polymerase III subunit alpha | - |
| TO66_RS05985 (TO66_05975) | - | 1342460..1343407 (+) | 948 | WP_044461465.1 | acetyl-CoA carboxylase carboxyltransferase subunit alpha | - |
| TO66_RS05990 (TO66_05980) | tilS | 1343522..1344850 (+) | 1329 | WP_044461466.1 | tRNA lysidine(34) synthetase TilS | - |
| TO66_RS05995 (TO66_05985) | - | 1345125..1346756 (+) | 1632 | WP_044461467.1 | CTP synthase | - |
| TO66_RS06000 (TO66_05990) | kdsA | 1346762..1347607 (+) | 846 | WP_044461468.1 | 3-deoxy-8-phosphooctulonate synthase | - |
| TO66_RS06005 (TO66_05995) | eno | 1347765..1349054 (+) | 1290 | WP_044461469.1 | phosphopyruvate hydratase | - |
| TO66_RS06010 (TO66_06000) | ftsB | 1349227..1349505 (+) | 279 | WP_044461470.1 | cell division protein FtsB | - |
| TO66_RS06015 (TO66_06005) | ispD | 1349502..1350209 (+) | 708 | WP_044461471.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| TO66_RS06020 (TO66_06010) | - | 1350392..1351288 (-) | 897 | WP_044461472.1 | LysR substrate-binding domain-containing protein | - |
| TO66_RS06025 (TO66_06015) | - | 1351395..1352507 (+) | 1113 | WP_044461473.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| TO66_RS06030 (TO66_06020) | fghA | 1352590..1353441 (+) | 852 | WP_177330392.1 | S-formylglutathione hydrolase | - |
| TO66_RS06035 (TO66_06025) | ispF | 1353494..1353967 (+) | 474 | WP_044461474.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| TO66_RS06040 (TO66_06030) | truD | 1353964..1355022 (+) | 1059 | WP_044461475.1 | tRNA pseudouridine(13) synthase TruD | - |
| TO66_RS06045 (TO66_06035) | surE | 1355010..1355759 (+) | 750 | WP_044461476.1 | 5'/3'-nucleotidase SurE | - |
| TO66_RS06050 (TO66_06040) | - | 1355801..1356436 (+) | 636 | WP_171820139.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| TO66_RS32305 (TO66_06045) | - | 1356632..1357465 (+) | 834 | WP_044461478.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| TO66_RS06060 (TO66_06050) | rpoS | 1357571..1358575 (+) | 1005 | WP_044461479.1 | RNA polymerase sigma factor RpoS | - |
| TO66_RS06065 (TO66_06055) | fdxA | 1359080..1359403 (-) | 324 | WP_007908827.1 | ferredoxin FdxA | - |
| TO66_RS06070 (TO66_06060) | mutS | 1359546..1362125 (-) | 2580 | WP_044461480.1 | DNA mismatch repair protein MutS | - |
| TO66_RS06075 (TO66_06065) | - | 1362314..1363060 (+) | 747 | WP_171820074.1 | XRE family transcriptional regulator | - |
| TO66_RS06080 (TO66_06070) | - | 1363662..1364243 (+) | 582 | WP_044461482.1 | DUF642 domain-containing protein | - |
| TO66_RS06085 (TO66_06075) | - | 1364346..1364693 (+) | 348 | WP_044461483.1 | phage holin family protein | - |
| TO66_RS06090 (TO66_06080) | - | 1364860..1365624 (+) | 765 | WP_044461484.1 | N-acetylmuramoyl-L-alanine amidase | - |
| TO66_RS32310 | - | 1365777..1365959 (+) | 183 | WP_082061163.1 | Com family DNA-binding transcriptional regulator | - |
| TO66_RS06095 (TO66_06085) | - | 1365990..1366238 (+) | 249 | WP_044461485.1 | hypothetical protein | - |
| TO66_RS06100 (TO66_06090) | - | 1366399..1366923 (+) | 525 | WP_044461486.1 | hypothetical protein | - |
| TO66_RS06105 (TO66_06095) | - | 1366927..1367538 (+) | 612 | WP_044461487.1 | phage baseplate assembly protein V | - |
| TO66_RS06110 (TO66_06100) | - | 1367549..1367881 (+) | 333 | WP_044461488.1 | phage baseplate protein | - |
| TO66_RS06115 (TO66_06105) | - | 1367878..1368873 (+) | 996 | WP_044461489.1 | baseplate J/gp47 family protein | - |
| TO66_RS06120 (TO66_06110) | - | 1368870..1369604 (+) | 735 | WP_044461490.1 | phage tail protein I | - |
| TO66_RS06125 (TO66_06115) | - | 1369601..1370131 (+) | 531 | WP_044461491.1 | hypothetical protein | - |
| TO66_RS06130 (TO66_06120) | - | 1370250..1370870 (+) | 621 | WP_044461492.1 | hypothetical protein | - |
| TO66_RS06135 (TO66_06125) | - | 1370880..1371131 (+) | 252 | WP_044461493.1 | tail fiber assembly protein | - |
| TO66_RS06140 (TO66_06130) | - | 1371217..1371438 (+) | 222 | WP_044461494.1 | hypothetical protein | - |
| TO66_RS06145 (TO66_06135) | - | 1371441..1372607 (+) | 1167 | WP_044461495.1 | tail protein | - |
| TO66_RS06150 (TO66_06140) | - | 1372607..1373113 (+) | 507 | WP_044461496.1 | phage major tail tube protein | - |
| TO66_RS06155 (TO66_06145) | - | 1373234..1373836 (+) | 603 | WP_044461497.1 | phage tail assembly protein | - |
| TO66_RS06165 (TO66_06155) | - | 1373965..1376184 (+) | 2220 | WP_044461498.1 | phage tail tape measure protein | - |
| TO66_RS06170 (TO66_06160) | - | 1376184..1376567 (+) | 384 | WP_044461499.1 | phage tail protein | - |
| TO66_RS06175 (TO66_06165) | - | 1376560..1376772 (+) | 213 | WP_044461500.1 | tail protein X | - |
| TO66_RS06180 (TO66_06170) | - | 1376782..1377801 (+) | 1020 | WP_044461501.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| TO66_RS06185 (TO66_06175) | - | 1378000..1378497 (+) | 498 | WP_044461502.1 | hypothetical protein | - |
| TO66_RS06190 (TO66_06180) | - | 1378637..1379221 (+) | 585 | WP_044461503.1 | hypothetical protein | - |
| TO66_RS06195 (TO66_06185) | - | 1379218..1379400 (+) | 183 | WP_044461504.1 | DUF2635 domain-containing protein | - |
| TO66_RS06200 (TO66_06190) | - | 1379400..1380896 (+) | 1497 | WP_044461505.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| TO66_RS06205 (TO66_06195) | - | 1380963..1381310 (+) | 348 | WP_044461506.1 | phage tail tube protein | - |
| TO66_RS06210 (TO66_06200) | - | 1381307..1381603 (+) | 297 | WP_044461507.1 | phage tail assembly protein | - |
| TO66_RS06215 (TO66_06205) | - | 1381734..1383686 (+) | 1953 | WP_044461508.1 | tail protein | - |
| TO66_RS06220 (TO66_06210) | - | 1383673..1384911 (+) | 1239 | WP_044461509.1 | DNA circularization protein | - |
| TO66_RS06225 (TO66_06215) | - | 1384915..1385955 (+) | 1041 | WP_044461510.1 | phage baseplate assembly protein | - |
| TO66_RS06230 (TO66_06220) | - | 1386069..1386578 (+) | 510 | WP_044461511.1 | phage baseplate assembly protein V | - |
| TO66_RS06235 (TO66_06225) | - | 1386578..1386976 (+) | 399 | WP_044461512.1 | phage GP46 family protein | - |
| TO66_RS06240 (TO66_06230) | - | 1386966..1388006 (+) | 1041 | WP_044461513.1 | baseplate J/gp47 family protein | - |
| TO66_RS06245 (TO66_06235) | - | 1387994..1388593 (+) | 600 | WP_044461514.1 | YmfQ family protein | - |
| TO66_RS06250 (TO66_06240) | - | 1388605..1389462 (+) | 858 | WP_044461515.1 | hypothetical protein | - |
| TO66_RS06255 (TO66_06245) | - | 1389467..1390108 (+) | 642 | WP_082061044.1 | hypothetical protein | - |
| TO66_RS06260 (TO66_06250) | - | 1390239..1391792 (+) | 1554 | WP_044461516.1 | hypothetical protein | - |
| TO66_RS06265 (TO66_06255) | - | 1391795..1392265 (+) | 471 | WP_044461517.1 | tail fiber assembly protein | - |
| TO66_RS33205 | - | 1392305..1392448 (+) | 144 | WP_156162043.1 | hypothetical protein | - |
| TO66_RS06270 (TO66_06260) | - | 1392646..1393710 (+) | 1065 | WP_044461518.1 | hypothetical protein | - |
| TO66_RS06275 (TO66_06265) | - | 1393717..1394319 (+) | 603 | WP_044461519.1 | tail fiber assembly protein | - |
| TO66_RS06280 (TO66_06270) | - | 1394341..1394904 (+) | 564 | WP_044461520.1 | glycoside hydrolase family 19 protein | - |
| TO66_RS34245 | rz1 | 1395160..1395375 (+) | 216 | WP_409077166.1 | lysis system o-spanin lipoprotein Rz1 | - |
| TO66_RS06290 (TO66_06280) | - | 1395504..1396004 (+) | 501 | WP_044461522.1 | CinA family protein | - |
| TO66_RS06295 (TO66_06285) | recA | 1396088..1397140 (+) | 1053 | WP_044461523.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37378.94 Da Isoelectric Point: 5.4974
>NTDB_id=140665 TO66_RS06295 WP_044461523.1 1396088..1397140(+) (recA) [Pseudomonas sp. MRSN 12121 strain MRSN12121]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGSALEK
QIRDKLLAPSADGKALPVNESIDDMADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGSALEK
QIRDKLLAPSADGKALPVNESIDDMADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=140665 TO66_RS06295 WP_044461523.1 1396088..1397140(+) (recA) [Pseudomonas sp. MRSN 12121 strain MRSN12121]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCTCTCGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCGGAATCGTCCGGTAAAACCACCCTAACCCTGTCCGTGATTGCC
CAGGCCCAGAAGATGGGCGCCACTTGCGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAATACGCAGGCAAGCTGGG
GGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCACCGACATGCTGGTGCGTT
CCAACGCCATCGACGTGATCGTGATCGACTCCGTGGCGGCACTGGTGCCCAAGGCCGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGCCTGGATATCCGTCGCACTGGCGCGGTGAAAGAAGGCGACGAAGTCGTCGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCACCGTTCCGTCAGGCTGAATTCCAGATCCTGTACGGCAAGGGTAT
CTACCTGAACGGCGAGATCATCGACCTTGGCGTGCTGCACGGTTTCCTCGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAGATCGGGAGCGCCCTCGAGAAG
CAGATCCGCGACAAACTGCTGGCACCGAGCGCGGATGGCAAGGCGCTGCCGGTCAACGAGAGCATCGACGACATGGCCGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCTCTCGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCGGAATCGTCCGGTAAAACCACCCTAACCCTGTCCGTGATTGCC
CAGGCCCAGAAGATGGGCGCCACTTGCGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAATACGCAGGCAAGCTGGG
GGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCACCGACATGCTGGTGCGTT
CCAACGCCATCGACGTGATCGTGATCGACTCCGTGGCGGCACTGGTGCCCAAGGCCGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGCCTGGATATCCGTCGCACTGGCGCGGTGAAAGAAGGCGACGAAGTCGTCGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCACCGTTCCGTCAGGCTGAATTCCAGATCCTGTACGGCAAGGGTAT
CTACCTGAACGGCGAGATCATCGACCTTGGCGTGCTGCACGGTTTCCTCGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAGATCGGGAGCGCCCTCGAGAAG
CAGATCCGCGACAAACTGCTGGCACCGAGCGCGGATGGCAAGGCGCTGCCGGTCAACGAGAGCATCGACGACATGGCCGA
CGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.