Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Achr_RS05890 Genome accession   NZ_CP010415
Coordinates   1294002..1295051 (+) Length   349 a.a.
NCBI ID   WP_039802691.1    Uniprot ID   A0A0C4WH60
Organism   Azotobacter chroococcum NCIMB 8003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1289002..1300051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Achr_RS05870 (Achr_11690) rpoS 1289195..1290196 (+) 1002 WP_039802688.1 RNA polymerase sigma factor RpoS -
  Achr_RS05875 (Achr_11700) fdxA 1290283..1290606 (-) 324 WP_039802689.1 ferredoxin FdxA -
  Achr_RS05880 (Achr_11710) mutS 1290742..1293309 (-) 2568 WP_039802690.1 DNA mismatch repair protein MutS -
  Achr_RS05885 (Achr_11720) - 1293381..1293914 (+) 534 WP_052263872.1 CinA family protein -
  Achr_RS05890 (Achr_11730) recA 1294002..1295051 (+) 1050 WP_039802691.1 recombinase RecA Machinery gene
  Achr_RS05895 (Achr_11740) recX 1295060..1295530 (+) 471 WP_039802692.1 recombination regulator RecX -
  Achr_RS05900 (Achr_11750) - 1295764..1296843 (-) 1080 WP_039802693.1 LOG family protein -
  Achr_RS05905 (Achr_11760) - 1296991..1298397 (-) 1407 WP_039802695.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37204.52 Da        Isoelectric Point: 5.3078

>NTDB_id=136982 Achr_RS05890 WP_039802691.1 1294002..1295051(+) (recA) [Azotobacter chroococcum NCIMB 8003]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSTIA
EAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
THVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGNKIGQGKANAAKFLEDNREVAAAIEK
SIRDQLLAAPASARPAAVADEPADADLDY

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=136982 Achr_RS05890 WP_039802691.1 1294002..1295051(+) (recA) [Azotobacter chroococcum NCIMB 8003]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCGGCCTTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCGCGGTGATGCG
CATGGGCGACCACGAGCGCCAGGCGATTCCGGCCATTTCCACCGGCTCCCTGGGGCTGGACATCGCACTCGGCATCGGTG
GCCTGCCCAAGGGACGGATTGTCGAGATCTACGGCCCCGAATCCTCCGGCAAGACCACCCTGACTCTGTCGACCATCGCC
GAGGCGCAGAAGCAGGGCGCCACCTGCGCCTTCGTCGATGCCGAGCACGCGCTCGACCCGGATTATGCCGCCAAGCTCGG
GGTGAACGTCGACGACCTGCTGGTCTCGCAGCCGGATACCGGCGAGCAGGCCCTGGAGATCACCGACATGCTGGTGCGCT
CCAATGCGGTGGACGTGATTATCGTCGACTCGGTGGCGGCACTGGTGCCCAAGGCGGAGATCGAGGGCGAGATGGGCGAT
ACCCACGTCGGCCTGCAGGCGCGTCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATTTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGTGGCAACGCCC
TGAAGTTCTACGCCTCCGTGCGTCTGGACATCCGCCGTACCGGCGCGGTCAAGGAGGGCGACGAGGTGGTGGGCAGCGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGTAT
CTACCGCAACGGCGAGATCATCGATCTTGGCGTGCAGCTCGGTCTGCTGGAGAAGTCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAATGCGGCCAAGTTCCTCGAGGACAATCGGGAGGTCGCCGCGGCCATCGAGAAG
AGCATCCGCGACCAGCTGCTCGCTGCGCCTGCCAGTGCCCGGCCGGCGGCTGTGGCCGACGAGCCGGCCGACGCGGACCT
CGACTACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C4WH60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.761

99.427

0.883
  recA Acinetobacter baylyi ADP1

73.487

99.427

0.731
  recA Acinetobacter baumannii D1279779

75.684

94.269

0.713
  recA Vibrio cholerae strain A1552

74.924

93.696

0.702
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

93.696

0.702
  recA Glaesserella parasuis strain SC1401

70.809

99.14

0.702
  recA Ralstonia pseudosolanacearum GMI1000

73.27

91.117

0.668
  recA Neisseria gonorrhoeae MS11

70.679

92.837

0.656
  recA Neisseria gonorrhoeae MS11

70.679

92.837

0.656
  recA Neisseria gonorrhoeae strain FA1090

70.679

92.837

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

93.696

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.905

96.275

0.596
  recA Helicobacter pylori strain NCTC11637

63.303

93.696

0.593
  recA Helicobacter pylori 26695

62.691

93.696

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

92.264

0.582
  recA Streptococcus mutans UA159

60.55

93.696

0.567
  recA Streptococcus mitis SK321

59.816

93.41

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

91.977

0.556
  recA Streptococcus mitis NCTC 12261

59.202

93.41

0.553
  recA Streptococcus pneumoniae TIGR4

58.896

93.41

0.55
  recA Streptococcus pneumoniae Rx1

58.896

93.41

0.55
  recA Streptococcus pneumoniae D39

58.896

93.41

0.55
  recA Streptococcus pneumoniae R6

58.896

93.41

0.55
  recA Streptococcus pyogenes NZ131

59.077

93.123

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.098

93.983

0.527
  recA Lactococcus lactis subsp. cremoris KW2

56.656

92.55

0.524

Multiple sequence alignment