Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RE92_RS02040 Genome accession   NZ_CP010268
Coordinates   527855..528916 (-) Length   353 a.a.
NCBI ID   WP_040101540.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain Sb3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 522855..533916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE92_RS02020 (RE92_02020) - 523727..523987 (-) 261 WP_007430104.1 stage V sporulation protein S -
  RE92_RS02025 (RE92_02025) - 524117..524911 (-) 795 WP_040101539.1 TIGR00282 family metallophosphoesterase -
  RE92_RS02030 (RE92_02030) rny 524988..526532 (-) 1545 WP_013309958.1 ribonuclease Y -
  RE92_RS02035 (RE92_02035) - 526894..527643 (-) 750 WP_025679774.1 regulatory protein RecX -
  RE92_RS02040 (RE92_02040) recA 527855..528916 (-) 1062 WP_040101540.1 recombinase RecA Machinery gene
  RE92_RS02045 (RE92_02045) cinA 529144..530412 (-) 1269 WP_025679772.1 competence/damage-inducible protein A Machinery gene
  RE92_RS02050 (RE92_02050) pgsA 530506..531093 (-) 588 WP_040101541.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RE92_RS02055 (RE92_02055) - 531302..531793 (-) 492 WP_040101542.1 YajQ family cyclic di-GMP-binding protein -
  RE92_RS26445 - 531939..532103 (-) 165 WP_013370749.1 hypothetical protein -
  RE92_RS02060 (RE92_02060) - 532188..533300 (-) 1113 WP_040101543.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38232.63 Da        Isoelectric Point: 5.2061

>NTDB_id=135597 RE92_RS02040 WP_040101540.1 527855..528916(-) (recA) [Paenibacillus polymyxa strain Sb3-1]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETIPSGSIALDIALGTGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRVASNLITTIAPPTEEELAQEAKEEQELLKLE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=135597 RE92_RS02040 WP_040101540.1 527855..528916(-) (recA) [Paenibacillus polymyxa strain Sb3-1]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTTGGTAAAGGTTCCATTATGAAGTT
GGGTGAGTCTACTCACATGCAAGTGGAAACAATCCCCAGTGGTTCGATTGCTTTGGATATTGCGTTAGGAACGGGCGGCT
TTCCAAGAGGCCGGATTATTGAAGTATATGGACCGGAATCATCCGGTAAAACGACAGTAGCTCTTCATGCTATTGCAGAG
GTGCAAAAAACAGGCGGACAAGCCGCCTTTATCGATGCCGAGCATGCGCTTGATCCGTCGTATGCGAGCAAGCTGGGTGT
CAATATTGATGAGTTGTTACTATCGCAACCAGATACAGGTGAGCAGGCATTGGAGATTGCCGAAGCTCTTGTGCGTAGTG
GGGCAGTGGACATTATCGTCGTTGACTCTGTAGCGGCACTTGTACCGAAGGCAGAGATTGAAGGCGAAATGGGAGATTCC
CATGTCGGTCTTCAAGCGCGCTTGATGTCACAGGCATTGCGTAAGCTGTCTGGAGCCATTAATAAATCGAAAACCATTGC
TATCTTTATCAACCAGCTCCGTGAAAAAGTAGGTGTTATGTTCGGTAACCCTGAGACTACACCGGGTGGACGTGCCTTGA
AGTTTTACTCTACGGTACGTTTGGATGTTCGTCGTATCGAAAGCTTGAAAATGGGTAACGACATCGTGGGTAACCGTACA
CGTATTAAAGTCGTGAAGAATAAAGTCGCACCTCCTTTCCGTCAGGCTGAAGTGGATATTATGTACGGTGAGGGCATTTC
CAAAGAAGGAAGCTTGATCGATATCGGTACGGAGCACGACATTGTCGACAAGAGCGGAGCATGGTATTCCTACGAAGGCG
AGCGCCTTGGTCAGGGACGTGAGAATGCAAAGCAATTTTTGAAGGAAAATCCGAACATTGCTAGTACGATCGAGCAAAAA
ATCCGGGTGGCCAGTAATTTGATTACAACAATTGCTCCACCGACAGAAGAAGAGTTGGCGCAGGAGGCCAAGGAAGAACA
GGAATTGCTGAAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.714

91.218

0.782
  recA Latilactobacillus sakei subsp. sakei 23K

71.681

96.034

0.688
  recA Streptococcus mitis NCTC 12261

66.762

98.867

0.66
  recA Streptococcus mitis SK321

66.476

98.867

0.657
  recA Streptococcus mutans UA159

66

99.15

0.654
  recA Streptococcus pneumoniae R6

68.58

93.768

0.643
  recA Streptococcus pneumoniae D39

68.58

93.768

0.643
  recA Streptococcus pneumoniae TIGR4

68.58

93.768

0.643
  recA Streptococcus pneumoniae Rx1

68.58

93.768

0.643
  recA Streptococcus pyogenes NZ131

68.923

92.068

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.767

93.768

0.626
  recA Neisseria gonorrhoeae MS11

64.97

94.618

0.615
  recA Neisseria gonorrhoeae MS11

64.97

94.618

0.615
  recA Neisseria gonorrhoeae strain FA1090

64.97

94.618

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.188

90.652

0.609
  recA Acinetobacter baylyi ADP1

61.08

99.717

0.609
  recA Vibrio cholerae strain A1552

67.188

90.652

0.609
  recA Acinetobacter baumannii D1279779

61.782

98.584

0.609
  recA Pseudomonas stutzeri DSM 10701

62.757

96.601

0.606
  recA Glaesserella parasuis strain SC1401

61.143

99.15

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.205

95.467

0.603
  recA Ralstonia pseudosolanacearum GMI1000

67.532

87.252

0.589
  recA Helicobacter pylori 26695

60.882

96.317

0.586
  recA Helicobacter pylori strain NCTC11637

60.947

95.751

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.27

92.351

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

91.501

0.55

Multiple sequence alignment