Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QR90_RS05880 Genome accession   NZ_CP010028
Coordinates   1227218..1228309 (-) Length   363 a.a.
NCBI ID   WP_039682999.1    Uniprot ID   A0A0A7KF49
Organism   Deinococcus radiopugnans strain DY59     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1222218..1233309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR90_RS05860 (QR90_05860) - 1222481..1223290 (+) 810 WP_039682995.1 SDR family NAD(P)-dependent oxidoreductase -
  QR90_RS05865 (QR90_05865) era 1223351..1224352 (+) 1002 WP_081994934.1 GTPase Era -
  QR90_RS16655 - 1224626..1225348 (+) 723 WP_052195285.1 c-type cytochrome -
  QR90_RS05875 (QR90_05875) - 1225440..1227020 (+) 1581 WP_039682997.1 flavin monoamine oxidase family protein -
  QR90_RS05880 (QR90_05880) recA 1227218..1228309 (-) 1092 WP_039682999.1 recombinase RecA Machinery gene
  QR90_RS17130 (QR90_05885) thpR 1228306..1229223 (-) 918 WP_081994936.1 RNA 2',3'-cyclic phosphodiesterase -
  QR90_RS05890 (QR90_05890) - 1229220..1230425 (-) 1206 WP_039683001.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  QR90_RS05895 (QR90_05895) - 1230593..1231006 (+) 414 WP_039683003.1 DoxX family protein -
  QR90_RS05900 (QR90_05900) - 1231291..1232001 (+) 711 WP_039683005.1 phospholipase A2 -
  QR90_RS05905 (QR90_05905) - 1232280..1232957 (+) 678 WP_039683007.1 hypothetical protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38276.96 Da        Isoelectric Point: 5.6419

>NTDB_id=133675 QR90_RS05880 WP_039682999.1 1227218..1228309(-) (recA) [Deinococcus radiopugnans strain DY59]
MSKENPKEITAAPSDSKERAKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRVTEIYGP
ESGGKTTLALSIVAQAQKAGGTCAFIDAEHALDPVYARALGCNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVA
ALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRK
IGQPIKVGNDAVANTVKVKTVKNKVAAPFKEVELALVYGKGFDQVADLVGLAADMDIIKKAGSFYSYGDERIGQGKEKAI
AYIAERPAVEQEIRDRVMASIRSGGASEKAAPPAEEKIVALAE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=133675 QR90_RS05880 WP_039682999.1 1227218..1228309(-) (recA) [Deinococcus radiopugnans strain DY59]
ATGAGTAAAGAGAATCCAAAAGAAATCACCGCCGCCCCCAGCGACAGCAAGGAGCGCGCCAAGGCCATCGAGACGGCCAT
GAGCCAGATCGAGAAGGCCTTCGGCAAGGGCAGCATCATGAAGCTGGGCGCCGAGAGCAAGCTGGACGTGCAGGTGGTGT
CCACCGGCAGCCTGAGCCTGGATCTGGCGCTGGGCGTGGGCGGCATTCCGCGCGGGCGCGTGACCGAGATCTACGGCCCC
GAATCCGGCGGCAAGACCACCCTGGCCCTGAGCATCGTGGCCCAGGCCCAGAAGGCCGGCGGCACCTGCGCGTTCATCGA
CGCCGAGCACGCCCTCGACCCGGTGTACGCCCGCGCGCTGGGCTGCAACACCGACGAACTGCTGGTGTCTCAGCCCGACA
ACGGCGAGCAGGCGCTGGAAATCATGGAGCTGCTGGTGCGCTCGGGCGCCATCGACGTGGTGGTGGTGGACAGCGTGGCC
GCCCTGACGCCGCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCTGCCCGGCCTGCAGGCCCGATTGATGAGCCAGGC
GCTGCGCAAGCTGACCGCCATCCTGTCCAAGACCGGCACCGCCGCCATCTTCATCAACCAGGTGCGCGAGAAGATCGGCG
TGATGTACGGCAACCCCGAAACCACCACCGGGGGCCGCGCGCTGAAGTTCTATTCCAGCGTCAGGTTGGACGTCCGCAAG
ATCGGCCAGCCCATCAAGGTGGGCAACGACGCCGTGGCGAACACCGTCAAGGTCAAGACCGTCAAGAACAAGGTGGCCGC
GCCGTTCAAGGAAGTGGAACTGGCGCTGGTCTACGGCAAGGGCTTTGACCAGGTGGCCGATCTGGTGGGCCTGGCCGCCG
ATATGGACATCATCAAGAAAGCGGGCAGCTTCTACAGCTACGGCGACGAACGCATCGGCCAGGGCAAGGAGAAGGCCATC
GCCTACATCGCCGAGCGTCCCGCCGTGGAGCAGGAGATCCGTGACCGCGTGATGGCCAGCATCCGCAGCGGCGGCGCCTC
CGAGAAGGCCGCGCCACCCGCCGAAGAGAAGATTGTCGCGCTGGCAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7KF49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

93.605

94.766

0.887
  recA Glaesserella parasuis strain SC1401

62.538

91.185

0.57
  recA Streptococcus pneumoniae Rx1

62.614

90.634

0.567
  recA Streptococcus pneumoniae R6

62.614

90.634

0.567
  recA Streptococcus pneumoniae D39

62.614

90.634

0.567
  recA Streptococcus pneumoniae TIGR4

62.614

90.634

0.567
  recA Streptococcus mitis SK321

63.158

88.981

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

59.012

94.766

0.559
  recA Streptococcus mitis NCTC 12261

62.848

88.981

0.559
  recA Streptococcus pyogenes NZ131

60.18

92.011

0.554
  recA Streptococcus mutans UA159

60.18

92.011

0.554
  recA Acinetobacter baylyi ADP1

59.292

93.388

0.554
  recA Acinetobacter baumannii D1279779

60.725

91.185

0.554
  recA Ralstonia pseudosolanacearum GMI1000

61.043

89.807

0.548
  recA Neisseria gonorrhoeae MS11

59.878

90.634

0.543
  recA Neisseria gonorrhoeae MS11

59.878

90.634

0.543
  recA Neisseria gonorrhoeae strain FA1090

59.878

90.634

0.543
  recA Bacillus subtilis subsp. subtilis str. 168

60.062

88.981

0.534
  recA Vibrio cholerae strain A1552

60.125

88.43

0.532
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.125

88.43

0.532
  recA Lactococcus lactis subsp. cremoris KW2

58.282

89.807

0.523
  recA Pseudomonas stutzeri DSM 10701

55.294

93.664

0.518
  recA Helicobacter pylori strain NCTC11637

54.839

93.939

0.515
  recA Helicobacter pylori 26695

54.839

93.939

0.515
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.572

93.388

0.51
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.79

89.256

0.507

Multiple sequence alignment