Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LT85_RS21545 Genome accession   NZ_CP009962
Coordinates   4888606..4889724 (-) Length   372 a.a.
NCBI ID   WP_038493047.1    Uniprot ID   -
Organism   Collimonas arenae strain Cal35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4883606..4894724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT85_RS21520 (LT85_4345) - 4883882..4884658 (-) 777 WP_038493039.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  LT85_RS21525 (LT85_4346) sucD 4884952..4885833 (-) 882 WP_038493041.1 succinate--CoA ligase subunit alpha -
  LT85_RS21530 (LT85_4347) sucC 4885853..4887025 (-) 1173 Protein_4307 ADP-forming succinate--CoA ligase subunit beta -
  LT85_RS21535 (LT85_4348) - 4887102..4887680 (-) 579 WP_052135389.1 DUF2889 domain-containing protein -
  LT85_RS21540 (LT85_4349) recX 4887943..4888404 (-) 462 WP_038493045.1 recombination regulator RecX -
  LT85_RS21545 (LT85_4350) recA 4888606..4889724 (-) 1119 WP_038493047.1 recombinase RecA Machinery gene
  LT85_RS21550 (LT85_4352) ggt 4890136..4891887 (+) 1752 WP_156117684.1 gamma-glutamyltransferase -
  LT85_RS21555 (LT85_4353) - 4892201..4893238 (+) 1038 WP_038493051.1 DUF1338 domain-containing protein -
  LT85_RS21560 (LT85_4354) - 4893246..4894664 (+) 1419 WP_052135390.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39400.89 Da        Isoelectric Point: 5.3869

>NTDB_id=133199 LT85_RS21545 WP_038493047.1 4888606..4889724(-) (recA) [Collimonas arenae strain Cal35]
MDDKKSAANPDKSKALAAALAQIEKQFGKGSVMRMEDGAVVEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGINLSELLISQPDTGEQALEITDALVRSGGVDLIVVDSVAALTPRA
EIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSYNGERIGQGKDNARTYLKERP
ELAREIENKVRASLGVPELGVIKSDAGDKSEKAAAKAASKAAAAATKAEEPV

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=133199 LT85_RS21545 WP_038493047.1 4888606..4889724(-) (recA) [Collimonas arenae strain Cal35]
ATGGACGATAAAAAATCCGCAGCCAACCCGGATAAAAGCAAGGCCCTAGCCGCGGCCTTGGCGCAGATCGAAAAGCAGTT
CGGCAAAGGTTCTGTCATGCGGATGGAAGACGGCGCCGTGGTCGAAGAGGTGCAAGTCGTCTCGACCGGTTCGCTCGGCC
TGGATATCGCGCTCGGCGTCGGCGGCTTGCCGCGTGGCCGCGTCGTGGAAATCTACGGCCCGGAATCGTCAGGCAAAACC
ACGCTGACCCTGCAAACCATCGCCGAAATGCAAAAACTGGGCGGAACCTGCGCGTTTATCGATGCGGAACACGCATTGGA
CGTAGGCTATGCGCAGAAACTCGGCATCAACCTGTCCGAACTGCTGATCTCGCAACCGGATACCGGCGAACAGGCGTTGG
AAATCACCGATGCGCTGGTGCGCTCCGGCGGCGTCGACCTGATTGTGGTCGACTCGGTGGCGGCGTTGACGCCGCGCGCT
GAAATCGAAGGCGACATGGGTGATTCCCTGCCAGGCCTGCAAGCACGTCTGATGTCGCAAGCGTTGCGCAAGCTGACCGG
CAGCATCAACCGCACCAATACGCTGGTGATTTTCATCAATCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAATCCGG
AAACCACCACCGGCGGTAATGCCCTCAAGTTCTACGCTTCGGTGCGCCTGGATATTCGTCGTACCGGTTCGATCAAGTCC
GGCGACGAAGTCATCGGGAACGAAACCAAAGTCAAAGTCGTCAAAAACAAGATCGCGCCGCCATTCAAGGAAGCGCACTT
CGACATCCTGTATGGCGAAGGCACATCCCGCGAAGGTGAAATCCTCGATCTCGGTTCCGATGCCAAGATTGTTGAAAAGT
CGGGCGCCTGGTACAGCTACAACGGCGAACGCATCGGCCAAGGCAAGGACAATGCCCGTACCTACCTGAAAGAACGTCCG
GAACTGGCGCGCGAAATTGAAAACAAGGTGCGCGCTTCGCTGGGTGTGCCTGAGTTGGGTGTGATCAAATCGGATGCAGG
CGACAAGAGTGAAAAAGCCGCAGCCAAGGCTGCCAGCAAAGCCGCTGCAGCTGCAACCAAGGCTGAAGAACCTGTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.977

92.473

0.758
  recA Glaesserella parasuis strain SC1401

66.759

97.043

0.648
  recA Neisseria gonorrhoeae MS11

73.926

87.634

0.648
  recA Neisseria gonorrhoeae strain FA1090

73.926

87.634

0.648
  recA Neisseria gonorrhoeae MS11

73.926

87.634

0.648
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.561

88.172

0.64
  recA Vibrio cholerae strain A1552

72.561

88.172

0.64
  recA Acinetobacter baylyi ADP1

70.659

89.785

0.634
  recA Pseudomonas stutzeri DSM 10701

72.222

87.097

0.629
  recA Acinetobacter baumannii D1279779

71.605

87.097

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.665

89.785

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.319

92.742

0.578
  recA Helicobacter pylori 26695

64.264

89.516

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

64.157

89.247

0.573
  recA Helicobacter pylori strain NCTC11637

63.964

89.516

0.573
  recA Streptococcus pyogenes NZ131

63.83

88.441

0.565
  recA Streptococcus mitis NCTC 12261

61.471

91.398

0.562
  recA Streptococcus mitis SK321

61.471

91.398

0.562
  recA Streptococcus mutans UA159

62.952

89.247

0.562
  recA Streptococcus pneumoniae Rx1

63.333

88.71

0.562
  recA Streptococcus pneumoniae D39

63.333

88.71

0.562
  recA Streptococcus pneumoniae R6

63.333

88.71

0.562
  recA Streptococcus pneumoniae TIGR4

63.333

88.71

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

62.349

89.247

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.19

87.634

0.554
  recA Lactococcus lactis subsp. cremoris KW2

60.294

91.398

0.551

Multiple sequence alignment