Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PKOR_RS08810 Genome accession   NZ_CP009621
Coordinates   2026652..2027695 (-) Length   347 a.a.
NCBI ID   WP_046310229.1    Uniprot ID   A0A0E3ZDG5
Organism   Pontibacter korlensis strain X14-1T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2021652..2032695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKOR_RS08790 (PKOR_08785) - 2022759..2023469 (-) 711 WP_046310226.1 RluA family pseudouridine synthase -
  PKOR_RS08795 (PKOR_08790) - 2023698..2024732 (-) 1035 WP_046310227.1 sensor histidine kinase -
  PKOR_RS08800 (PKOR_08795) - 2024736..2025425 (-) 690 WP_046310228.1 response regulator transcription factor -
  PKOR_RS08805 (PKOR_08800) - 2025670..2026482 (-) 813 WP_235337357.1 DUF3108 domain-containing protein -
  PKOR_RS08810 (PKOR_08805) recA 2026652..2027695 (-) 1044 WP_046310229.1 recombinase RecA Machinery gene
  PKOR_RS08815 (PKOR_08810) - 2028325..2029476 (+) 1152 WP_235337359.1 hypothetical protein -
  PKOR_RS08820 (PKOR_08815) - 2029490..2030122 (-) 633 WP_046310230.1 GNAT family N-acetyltransferase -
  PKOR_RS08825 (PKOR_08820) - 2030294..2031157 (+) 864 WP_046310231.1 SDR family NAD(P)-dependent oxidoreductase -
  PKOR_RS08830 (PKOR_08825) - 2031235..2031663 (-) 429 WP_046310232.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37315.91 Da        Isoelectric Point: 5.3362

>NTDB_id=130806 PKOR_RS08810 WP_046310229.1 2026652..2027695(-) (recA) [Pontibacter korlensis strain X14-1T]
MSVSNEKLKALQLTMDKLDKTYGKGTVMKLSDNKVEDIPAISTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLTMHC
IAEAQRKGGLAAFIDAEHAFDRVYAQKLGIDTENLLISQPDNGEQALEIADHLIRSGAIDIIVIDSVAALVPKGELEGDM
GDSKMGLQARLMSQALRKLTGTINKTGCTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRVGQIKESADNIT
GNRTRVKVVKNKVAPPFKVVEFDIMYGEGISKVGEVLDLGVELGIVQKSGSWFSYNGDKLGQGRDGVKQILLDNPELMEE
IENKIRAIVKGEPEKVAAALDDAAAAE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=130806 PKOR_RS08810 WP_046310229.1 2026652..2027695(-) (recA) [Pontibacter korlensis strain X14-1T]
ATGAGCGTAAGCAACGAAAAACTTAAGGCCTTGCAGCTGACCATGGATAAGCTCGACAAAACTTACGGTAAAGGCACCGT
AATGAAGCTGAGCGACAACAAGGTTGAGGATATTCCGGCTATTTCCACTGGTTCGCTGGGTCTGGATATTGCTTTGGGTA
TCGGCGGTTTGCCACGTGGCCGTGTCGTAGAAATCTACGGTCCTGAGTCATCTGGTAAGACTACGCTTACCATGCACTGC
ATTGCGGAGGCACAGCGTAAAGGCGGCCTGGCAGCGTTTATTGATGCAGAGCATGCATTTGACAGGGTGTATGCCCAAAA
ACTAGGAATTGATACTGAAAACCTATTGATATCCCAGCCAGACAATGGTGAGCAGGCACTTGAAATAGCCGACCACCTGA
TTCGCTCTGGTGCTATCGATATTATTGTTATAGACTCTGTTGCTGCCCTTGTACCAAAAGGTGAATTGGAAGGCGACATG
GGTGACAGCAAGATGGGTCTGCAGGCACGTTTGATGTCTCAGGCGCTTCGTAAGCTTACAGGTACGATCAACAAAACAGG
ATGTACTTGTATCTTCATCAACCAGCTGCGTGAAAAGATCGGTGTGATGTTCGGTAACCCTGAAACAACTACTGGTGGTA
ACGCCCTGAAGTTCTACGCTTCTGTTCGTCTTGATATTCGCCGTGTAGGCCAGATCAAAGAGAGCGCTGACAACATTACT
GGTAACCGTACTCGTGTGAAAGTAGTGAAGAACAAAGTAGCTCCTCCGTTCAAAGTGGTAGAATTCGACATCATGTATGG
TGAAGGTATCTCCAAAGTAGGTGAGGTACTTGACCTGGGTGTTGAGCTGGGCATTGTTCAGAAATCAGGTTCATGGTTCT
CTTACAACGGCGATAAGCTGGGTCAGGGCCGCGATGGTGTGAAGCAGATTCTGCTTGATAACCCGGAACTGATGGAAGAA
ATAGAAAACAAGATCAGAGCCATTGTGAAAGGTGAGCCGGAGAAAGTAGCCGCCGCCTTAGACGATGCAGCTGCTGCCGA
GTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E3ZDG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.424

95.101

0.689
  recA Ralstonia pseudosolanacearum GMI1000

67.692

93.66

0.634
  recA Acinetobacter baylyi ADP1

62.941

97.983

0.617
  recA Glaesserella parasuis strain SC1401

63.473

96.254

0.611
  recA Acinetobacter baumannii D1279779

65.938

92.219

0.608
  recA Neisseria gonorrhoeae MS11

64.526

94.236

0.608
  recA Neisseria gonorrhoeae MS11

64.526

94.236

0.608
  recA Neisseria gonorrhoeae strain FA1090

64.526

94.236

0.608
  recA Vibrio cholerae strain A1552

60.997

98.271

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.997

98.271

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

92.795

0.597
  recA Pseudomonas stutzeri DSM 10701

64.486

92.507

0.597
  recA Helicobacter pylori strain NCTC11637

62.997

94.236

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.077

93.66

0.591
  recA Helicobacter pylori 26695

62.691

94.236

0.591
  recA Streptococcus mitis NCTC 12261

56.647

99.712

0.565
  recA Streptococcus pyogenes NZ131

59.692

93.66

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.692

93.66

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

59.443

93.084

0.553
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Streptococcus mitis SK321

58.642

93.372

0.548
  recA Streptococcus pneumoniae R6

57.846

93.66

0.542
  recA Streptococcus pneumoniae TIGR4

57.846

93.66

0.542
  recA Streptococcus pneumoniae D39

57.846

93.66

0.542
  recA Streptococcus pneumoniae Rx1

57.846

93.66

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.352

94.236

0.522

Multiple sequence alignment