Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LH86_RS00830 Genome accession   NZ_CP009459
Coordinates   172614..173678 (-) Length   354 a.a.
NCBI ID   WP_008458263.1    Uniprot ID   A0A9W5J7M7
Organism   Cedecea neteri strain ND14a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 167614..178678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH86_RS00815 (LH86_00820) csrA 168826..169011 (-) 186 WP_008458257.1 carbon storage regulator CsrA -
  LH86_RS00820 (LH86_00825) alaS 169256..171883 (-) 2628 WP_039297561.1 alanine--tRNA ligase -
  LH86_RS00825 (LH86_00830) - 172023..172538 (-) 516 WP_039297563.1 regulatory protein RecX -
  LH86_RS00830 (LH86_00835) recA 172614..173678 (-) 1065 WP_008458263.1 recombinase RecA Machinery gene
  LH86_RS00835 (LH86_00840) pncC 173764..174273 (-) 510 WP_039297566.1 nicotinamide-nucleotide amidase -
  LH86_RS00840 (LH86_00845) - 174404..175282 (-) 879 WP_039297568.1 metal ABC transporter substrate-binding protein -
  LH86_RS00845 (LH86_00850) - 175279..176163 (-) 885 WP_008458268.1 metal ABC transporter permease -
  LH86_RS00850 (LH86_00855) - 176160..176855 (-) 696 WP_039297571.1 metal ABC transporter ATP-binding protein -
  LH86_RS00855 (LH86_00865) - 177257..177805 (+) 549 WP_008458272.1 PTS glucitol/sorbitol transporter subunit IIC -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38245.63 Da        Isoelectric Point: 4.8144

>NTDB_id=129460 LH86_RS00830 WP_008458263.1 172614..173678(-) (recA) [Cedecea neteri strain ND14a]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANASNFLKENKPMAEEI
EKKLREMLLNNQDSTPDFTVDDHDEDAVETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=129460 LH86_RS00830 WP_008458263.1 172614..173678(-) (recA) [Cedecea neteri strain ND14a]
ATGGCTATCGACGAAAACAAACAGAAGGCGTTAGCGGCAGCACTGGGCCAGATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCCATGGACGTGGAAACGATCTCTACCGGTTCACTTTCTCTGGATATTGCGCTGGGCG
CAGGCGGCCTGCCAATGGGCCGTATCGTAGAAATCTACGGGCCTGAATCTTCCGGTAAAACAACGCTGACCCTGCAGGTT
ATTGCGGCCGCACAGCGTAGCGGTAAAACCTGTGCGTTCATTGATGCCGAGCACGCGCTGGACCCGGTCTATGCCAAAAA
ACTGGGCGTTGATATCGACAATCTGCTGTGTTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CACGTTCCGGCGCGGTTGACGTCATCATCGTTGACTCCGTTGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCAATGCGTAAGCTTGCTGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGTAACCCGGAAACCACGACCGGCGGTA
ACGCGCTGAAATTCTACGCGTCTGTCCGTCTCGACATTCGTCGTATCGGTGCCGTGAAGGATGGCGAAAACGTCGTCGGT
AGCGAAACCCGCGTGAAGGTAGTGAAAAACAAAATTGCCGCGCCATTTAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGTGAGCTGGTTGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCATGGTACAGCT
ACAACGGTGAAAAAATCGGTCAGGGCAAGGCAAACGCCAGCAATTTCCTGAAAGAGAACAAGCCGATGGCGGAAGAAATT
GAGAAGAAACTGCGCGAAATGCTGCTGAATAACCAGGACAGCACGCCGGACTTCACGGTAGATGACCACGACGAAGACGC
GGTCGAAACCAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.592

93.503

0.791
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.503

0.791
  recA Pseudomonas stutzeri DSM 10701

73.591

95.198

0.701
  recA Acinetobacter baylyi ADP1

70.435

97.458

0.686
  recA Acinetobacter baumannii D1279779

74.312

92.373

0.686
  recA Glaesserella parasuis strain SC1401

69.653

97.74

0.681
  recA Neisseria gonorrhoeae MS11

68.098

92.09

0.627
  recA Neisseria gonorrhoeae MS11

68.098

92.09

0.627
  recA Neisseria gonorrhoeae strain FA1090

68.098

92.09

0.627
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.853

0.621
  recA Helicobacter pylori strain NCTC11637

61.721

95.198

0.588
  recA Helicobacter pylori 26695

61.424

95.198

0.585
  recA Streptococcus pneumoniae D39

59.13

97.458

0.576
  recA Streptococcus pneumoniae Rx1

59.13

97.458

0.576
  recA Streptococcus pneumoniae TIGR4

59.13

97.458

0.576
  recA Streptococcus pneumoniae R6

59.13

97.458

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

57.507

99.718

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

91.525

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.068

0.565
  recA Streptococcus mutans UA159

61.231

91.808

0.562
  recA Streptococcus mitis NCTC 12261

61.61

91.243

0.562
  recA Streptococcus mitis SK321

61.61

91.243

0.562
  recA Streptococcus pyogenes NZ131

60.923

91.808

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.3

91.243

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.678

0.545

Multiple sequence alignment