Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JT31_RS16525 Genome accession   NZ_CP009451
Coordinates   3562758..3563822 (+) Length   354 a.a.
NCBI ID   WP_038479525.1    Uniprot ID   -
Organism   Cedecea neteri strain SSMD04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3557758..3568822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT31_RS16500 (JT31_16815) - 3558628..3559176 (-) 549 WP_008458272.1 PTS glucitol/sorbitol transporter subunit IIC -
  JT31_RS16505 (JT31_16820) - 3559578..3560273 (+) 696 WP_038479513.1 metal ABC transporter ATP-binding protein -
  JT31_RS16510 (JT31_16825) - 3560270..3561154 (+) 885 WP_038479516.1 metal ABC transporter permease -
  JT31_RS16515 (JT31_16830) - 3561151..3562029 (+) 879 WP_038479519.1 metal ABC transporter substrate-binding protein -
  JT31_RS16520 (JT31_16835) pncC 3562163..3562672 (+) 510 WP_038479522.1 nicotinamide-nucleotide amidase -
  JT31_RS16525 (JT31_16840) recA 3562758..3563822 (+) 1065 WP_038479525.1 recombinase RecA Machinery gene
  JT31_RS16530 (JT31_16845) - 3564347..3564862 (+) 516 WP_038479528.1 regulatory protein RecX -
  JT31_RS16535 (JT31_16850) alaS 3565002..3567629 (+) 2628 WP_038479531.1 alanine--tRNA ligase -
  JT31_RS16540 (JT31_16855) csrA 3567875..3568060 (+) 186 WP_008458257.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38199.60 Da        Isoelectric Point: 4.9566

>NTDB_id=129358 JT31_RS16525 WP_038479525.1 3562758..3563822(+) (recA) [Cedecea neteri strain SSMD04]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANASNFLKENKPMADEI
EKKLREMLLNNQDGTPDFTVDDHNENAVETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=129358 JT31_RS16525 WP_038479525.1 3562758..3563822(+) (recA) [Cedecea neteri strain SSMD04]
ATGGCTATCGACGAAAACAAACAGAAGGCGTTAGCGGCAGCACTGGGCCAGATTGAAAAACAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGTTCCATGGACGTGGAAACGATCTCTACCGGTTCACTTTCTCTGGACATCGCGCTGGGCG
CAGGCGGCCTGCCAATGGGCCGTATCGTAGAAATCTACGGGCCTGAATCTTCCGGTAAAACGACGCTGACCCTGCAGGTT
ATTGCTGCCGCGCAGCGTAGCGGTAAAACCTGTGCGTTCATCGATGCCGAGCACGCGCTGGACCCGGTATACGCTAAGAA
ACTGGGCGTTGATATCGACAACCTGCTGTGTTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CACGTTCCGGCGCGGTTGACGTCATCATCGTCGACTCCGTTGCGGCGCTGACGCCAAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTCATGTTCGGTAACCCGGAAACGACCACCGGCGGTA
ACGCGTTGAAATTCTACGCATCTGTCCGTCTCGACATTCGTCGTATCGGTGCGGTGAAAGATGGCGAAAACGTCGTCGGC
AGCGAAACCCGCGTGAAGGTTGTGAAAAACAAAATTGCAGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGCATCAACTTCTACGGTGAGCTGGTTGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCCTGGTACAGCT
ACAACGGCGAAAAAATCGGTCAGGGTAAGGCAAACGCCAGCAACTTCCTGAAAGAGAACAAGCCGATGGCAGATGAGATT
GAGAAGAAACTGCGCGAAATGCTGCTGAATAACCAGGACGGCACGCCAGACTTCACGGTAGATGACCACAACGAAAACGC
GGTCGAAACCAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.503

0.791
  recA Vibrio cholerae strain A1552

84.592

93.503

0.791
  recA Pseudomonas stutzeri DSM 10701

73.591

95.198

0.701
  recA Acinetobacter baumannii D1279779

74.006

92.373

0.684
  recA Acinetobacter baylyi ADP1

72.866

92.655

0.675
  recA Glaesserella parasuis strain SC1401

69.388

96.893

0.672
  recA Neisseria gonorrhoeae MS11

66.569

96.328

0.641
  recA Neisseria gonorrhoeae MS11

66.569

96.328

0.641
  recA Neisseria gonorrhoeae strain FA1090

66.569

96.328

0.641
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.853

0.621
  recA Helicobacter pylori strain NCTC11637

62.018

95.198

0.59
  recA Helicobacter pylori 26695

61.721

95.198

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

91.525

0.571
  recA Streptococcus pneumoniae TIGR4

62.229

91.243

0.568
  recA Streptococcus pneumoniae Rx1

62.229

91.243

0.568
  recA Streptococcus pneumoniae D39

62.229

91.243

0.568
  recA Streptococcus pneumoniae R6

62.229

91.243

0.568
  recA Streptococcus mitis NCTC 12261

61.92

91.243

0.565
  recA Streptococcus mutans UA159

61.538

91.808

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.76

94.068

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.808

0.562
  recA Streptococcus pyogenes NZ131

61.231

91.808

0.562
  recA Streptococcus mitis SK321

61.61

91.243

0.562
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.243

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.678

0.545

Multiple sequence alignment