Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG71_RS09610 Genome accession   NZ_CP009450
Coordinates   2053692..2054750 (+) Length   352 a.a.
NCBI ID   WP_043082325.1    Uniprot ID   A0A089PJX9
Organism   Pluralibacter gergoviae strain FB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2048692..2059750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG71_RS09585 (LG71_09785) mltB 2049187..2050266 (+) 1080 WP_043082320.1 lytic murein transglycosylase B -
  LG71_RS09590 (LG71_09795) - 2050498..2051172 (+) 675 WP_043082321.1 metal ABC transporter ATP-binding protein -
  LG71_RS09595 (LG71_09800) - 2051169..2052032 (+) 864 WP_043082322.1 metal ABC transporter permease -
  LG71_RS09600 (LG71_09805) - 2052043..2052921 (+) 879 WP_043082323.1 metal ABC transporter substrate-binding protein -
  LG71_RS09605 (LG71_09810) pncC 2053059..2053556 (+) 498 WP_043082324.1 nicotinamide-nucleotide amidase -
  LG71_RS09610 (LG71_09815) recA 2053692..2054750 (+) 1059 WP_043082325.1 recombinase RecA Machinery gene
  LG71_RS09615 (LG71_09820) recX 2054824..2055342 (+) 519 WP_043082327.1 recombination regulator RecX -
  LG71_RS09620 (LG71_09825) alaS 2055475..2058102 (+) 2628 WP_043082329.1 alanine--tRNA ligase -
  LG71_RS09625 (LG71_09830) csrA 2058340..2058525 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37854.30 Da        Isoelectric Point: 4.8875

>NTDB_id=129333 LG71_RS09610 WP_043082325.1 2053692..2054750(+) (recA) [Pluralibacter gergoviae strain FB2]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDDKPAFAVDGNDAEETHEEF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=129333 LG71_RS09610 WP_043082325.1 2053692..2054750(+) (recA) [Pluralibacter gergoviae strain FB2]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAACAGTTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGACGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGTG
CAGGCGGTCTGCCGATGGGACGTATCGTAGAGATCTACGGGCCTGAGTCCTCCGGTAAAACCACCCTGACCCTGCAGGTG
ATCGCCGCCGCGCAGCGTGAAGGCAAAACCTGTGCCTTTATTGATGCCGAGCACGCGCTGGATCCGGTCTATGCCCGCAA
GCTGGGCGTCGATATCGACAACCTGCTCTGCTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGTGACGCCCTGG
CGCGCTCCGGCGCGGTGGACGTGCTGGTGGTTGACTCCGTCGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTTGCCGGTAACCTCAAGCAGTCCAA
CACTCTGCTTATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTTGGTAACCCGGAAACCACCACCGGCGGTA
ATGCGCTGAAGTTCTACGCCTCCGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAAGAGGGCGATAACGTCGTCGGC
AGCGAAACCCGCGTCAAGGTCGTGAAGAACAAGATTGCCGCGCCGTTCAAGCAGGCGGAGTTCCAGATCCTCTACGGCGA
AGGCATCAACTTCCTCGGCGAACTGGTCGATCTCGGTGTGAAAGAGAAGCTGATTGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGACAAAATTGGTCAGGGTAAGGCGAACGCTATCTCCTGGCTGAAAGAGAACCCGGCGGCGGCCAAAGAGATC
GAGAAAAAGGTACGCGAACTGCTGCTGAACAACCAGGACGATAAGCCGGCGTTCGCCGTTGACGGCAACGATGCGGAAGA
GACGCACGAAGAGTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089PJX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

94.034

0.795
  recA Vibrio cholerae strain A1552

84.592

94.034

0.795
  recA Acinetobacter baylyi ADP1

71.92

99.148

0.713
  recA Acinetobacter baumannii D1279779

75.229

92.898

0.699
  recA Pseudomonas stutzeri DSM 10701

75.229

92.898

0.699
  recA Glaesserella parasuis strain SC1401

69.914

99.148

0.693
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.424

95.739

0.588
  recA Helicobacter pylori 26695

61.128

95.739

0.585
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Streptococcus mitis SK321

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.318

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

92.045

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.33

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56

Multiple sequence alignment