Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LH19_RS12670 Genome accession   NZ_CP009429
Coordinates   2552126..2553205 (-) Length   359 a.a.
NCBI ID   WP_054588302.1    Uniprot ID   -
Organism   Sphingopyxis macrogoltabida strain 203     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2547126..2558205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH19_RS12650 (LH19_12955) - 2548872..2549612 (-) 741 WP_054728435.1 hypothetical protein -
  LH19_RS12655 (LH19_12960) - 2549704..2550291 (-) 588 WP_054728438.1 hypothetical protein -
  LH19_RS12660 (LH19_12965) - 2550281..2550907 (-) 627 WP_054728441.1 glutathione S-transferase family protein -
  LH19_RS12665 (LH19_12970) speB 2550929..2551744 (-) 816 WP_054733484.1 agmatinase -
  LH19_RS12670 (LH19_12975) recA 2552126..2553205 (-) 1080 WP_054588302.1 recombinase RecA Machinery gene
  LH19_RS12675 (LH19_12980) - 2553319..2553672 (-) 354 WP_054728443.1 response regulator -
  LH19_RS12680 (LH19_12985) - 2553662..2556043 (-) 2382 WP_054733487.1 response regulator -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38474.83 Da        Isoelectric Point: 5.0579

>NTDB_id=129248 LH19_RS12670 WP_054588302.1 2552126..2553205(-) (recA) [Sphingopyxis macrogoltabida strain 203]
MAGQLSLVESGKSVNGTDRQKALDAALAQIDRAFGKGSVMKLGQKETMQVEAVSTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHTLAEAQKTGGTVAFVDAEHALDPVYARKLGVNIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKNGDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDIGVKAGLVEKSGAWFSYDSIRIGQGRENAKT
FLTENPELRERLEAAIRGRTDAVAEEMMAGPDDEGDDDN

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=129248 LH19_RS12670 WP_054588302.1 2552126..2553205(-) (recA) [Sphingopyxis macrogoltabida strain 203]
ATGGCCGGACAATTGTCACTCGTGGAATCGGGGAAATCAGTGAACGGAACGGACAGGCAGAAGGCGCTCGACGCCGCGCT
GGCGCAAATCGATCGCGCCTTCGGCAAGGGCTCGGTAATGAAGCTCGGCCAGAAGGAAACGATGCAGGTCGAGGCGGTCT
CGACCGGTTCGCTCGGGCTCGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTTATCGAAATCTACGGCCCC
GAAAGCTCGGGCAAGACGACGCTGGCGCTGCACACGCTCGCCGAGGCGCAAAAGACCGGCGGTACTGTCGCTTTCGTCGA
CGCCGAACATGCGCTCGATCCCGTCTATGCCCGCAAGCTCGGCGTCAACATCGACGAACTCATCGTGTCGCAGCCCGACA
CCGGCGAACAGGCGCTCGAAATCGTCGATACGCTGGTGCGTTCGAATGCGATCGACGTGCTCGTCGTCGACTCGGTCGCC
GCGCTCGTTCCGCGCGCCGAAATCGAGGGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCGCGCCTGATGTCGCAGTC
GCTGCGCAAGCTCACCGGTTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGTG
TGATGTACGGCAATCCCGAAACCACGACCGGCGGCAATGCGCTGAAATTCTATGCCTCGGTCCGTCTCGACATCCGCCGC
ACCGGCCAGATCAAGAATGGCGACGAGATCGTCGGCAACACCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTCGAATTCGACATCATGTACGGACAGGGCATTTCGAAGATCGGCGAGATCCTCGATATCGGGGTCAAGG
CCGGACTCGTCGAGAAATCGGGCGCCTGGTTCAGCTATGACTCGATCCGCATCGGGCAGGGCCGCGAGAATGCGAAGACC
TTCCTGACCGAAAATCCCGAACTTCGCGAACGGCTCGAAGCCGCCATCCGCGGCCGCACCGACGCGGTGGCCGAAGAGAT
GATGGCCGGTCCCGACGATGAGGGCGACGACGATAATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

65.903

97.214

0.641
  recA Pseudomonas stutzeri DSM 10701

67.055

95.543

0.641
  recA Neisseria gonorrhoeae MS11

67.353

94.708

0.638
  recA Neisseria gonorrhoeae MS11

67.353

94.708

0.638
  recA Neisseria gonorrhoeae strain FA1090

67.353

94.708

0.638
  recA Vibrio cholerae strain A1552

67.262

93.593

0.63
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.262

93.593

0.63
  recA Acinetobacter baylyi ADP1

65.774

93.593

0.616
  recA Acinetobacter baumannii D1279779

68.438

89.136

0.61
  recA Ralstonia pseudosolanacearum GMI1000

71.104

85.794

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.257

92.201

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.158

95.265

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

66.667

89.415

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

62.941

94.708

0.596
  recA Helicobacter pylori strain NCTC11637

61.721

93.872

0.579
  recA Streptococcus pneumoniae Rx1

59.654

96.657

0.577
  recA Streptococcus pneumoniae TIGR4

59.654

96.657

0.577
  recA Streptococcus pneumoniae R6

59.654

96.657

0.577
  recA Streptococcus pneumoniae D39

59.654

96.657

0.577
  recA Helicobacter pylori 26695

61.424

93.872

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

91.365

0.571
  recA Streptococcus pyogenes NZ131

60.117

94.986

0.571
  recA Streptococcus mitis NCTC 12261

61.963

90.808

0.563
  recA Streptococcus mitis SK321

61.963

90.808

0.563
  recA Streptococcus mutans UA159

58.944

94.986

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.202

90.808

0.538

Multiple sequence alignment