Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R70331_RS17480 Genome accession   NZ_CP009284
Coordinates   4127938..4129002 (-) Length   354 a.a.
NCBI ID   WP_042177462.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R7-0331     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4122938..4134002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R70331_RS17460 (R70331_18105) - 4123839..4124099 (-) 261 WP_019910496.1 stage V sporulation protein S -
  R70331_RS17465 (R70331_18110) - 4124300..4125094 (-) 795 WP_042177459.1 TIGR00282 family metallophosphoesterase -
  R70331_RS17470 (R70331_18115) rny 4125154..4126695 (-) 1542 WP_042177460.1 ribonuclease Y -
  R70331_RS17475 (R70331_18120) - 4127016..4127750 (-) 735 WP_042177461.1 RecX family transcriptional regulator -
  R70331_RS17480 (R70331_18125) recA 4127938..4129002 (-) 1065 WP_042177462.1 recombinase RecA Machinery gene
  R70331_RS17485 (R70331_18130) - 4129302..4130591 (-) 1290 WP_042177463.1 competence/damage-inducible protein A -
  R70331_RS17490 (R70331_18135) pgsA 4130644..4131231 (-) 588 WP_042177464.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R70331_RS17495 (R70331_18140) - 4131324..4131815 (-) 492 WP_042177465.1 YajQ family cyclic di-GMP-binding protein -
  R70331_RS31870 - 4132017..4132178 (-) 162 WP_167336664.1 hypothetical protein -
  R70331_RS17500 (R70331_18150) - 4132259..4133224 (-) 966 WP_042177466.1 RodZ family helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38094.56 Da        Isoelectric Point: 4.9163

>NTDB_id=128162 R70331_RS17480 WP_042177462.1 4127938..4129002(-) (recA) [Paenibacillus sp. FSL R7-0331]
MSDRRAALDMALRQIEKQFGKGSIMKLGESNHMKVEVVPSGSLALDIALGIGGLPKGRIIEVYGPESSGKTTVALHAIAE
VQRVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRT
KIKVVKNKVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENAKQFLKEHPEIALVIENK
IREASNLTTIVAAPTEAEAAAEKEEEDNLLLEIE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=128162 R70331_RS17480 WP_042177462.1 4127938..4129002(-) (recA) [Paenibacillus sp. FSL R7-0331]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTTCGTCAAATAGAAAAACAATTTGGTAAAGGTTCGATCATGAAATT
GGGTGAGTCCAATCACATGAAAGTGGAAGTTGTTCCTAGCGGTTCCTTGGCACTTGATATTGCCCTGGGCATAGGCGGAC
TTCCAAAAGGACGTATCATAGAAGTATATGGACCGGAATCCTCCGGTAAAACAACGGTTGCCCTGCATGCTATTGCAGAA
GTACAGAGAGTTGGCGGACAAGCCGCCTTCATCGATGCAGAGCATGCGCTCGACCCTAAATATGCCAACGCGCTTGGCGT
CAATATTGATGAGCTACTGCTGTCCCAGCCGGACACAGGCGAACAGGCGCTGGAAATTGCTGAAGCGCTCGTGCGCAGCG
GTGCGGTAGATATCATCGTTGTTGACTCTGTAGCAGCTCTGGTGCCTAAGGCTGAAATTGAAGGCGACATGGGGGATTCC
CACGTTGGTCTGCAGGCCCGTCTGATGTCTCAGGCTCTGCGTAAGCTCTCCGGCGCAATCAACAAATCCAACACCATCGC
AATCTTCATCAACCAGCTGCGTGAGAAGATCGGTGTTATGTTCGGAAATCCCGAAACAACTCCGGGCGGACGGGCATTGA
AGTTCTACTCCTCCGTACGTCTTGACGTACGCCGTGTTGAGAGCATCAAAATGGGTAATGATGTTGTCGGTAACCGTACC
AAGATCAAAGTCGTGAAGAACAAGGTAGCTCCTCCGTTCAAACAGGCAGATGTTGATATTATGTACGGTGAAGGCATCTC
CAAAGAAGGAAGCCTTGTCGATATCGGAACGGAAATGGATATTGTTAACAAGAGCGGAGCCTGGTATTCCTACGAAGGCG
AACGTCTTGGACAAGGACGTGAGAATGCTAAGCAATTCCTTAAGGAACATCCGGAAATTGCCCTGGTAATCGAGAATAAG
ATCCGTGAAGCGAGCAACCTGACAACCATCGTTGCTGCACCAACGGAAGCTGAGGCTGCTGCAGAGAAAGAAGAAGAAGA
TAATCTGCTGCTTGAAATTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

92.373

0.777
  recA Latilactobacillus sakei subsp. sakei 23K

70.262

96.893

0.681
  recA Streptococcus mutans UA159

66.482

100

0.678
  recA Streptococcus pyogenes NZ131

66.854

100

0.672
  recA Streptococcus pneumoniae Rx1

71.212

93.22

0.664
  recA Streptococcus pneumoniae D39

71.212

93.22

0.664
  recA Streptococcus pneumoniae R6

71.212

93.22

0.664
  recA Streptococcus pneumoniae TIGR4

71.212

93.22

0.664
  recA Streptococcus mitis NCTC 12261

71.385

91.808

0.655
  recA Streptococcus mitis SK321

71.077

91.808

0.653
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.22

0.638
  recA Ralstonia pseudosolanacearum GMI1000

66.366

94.068

0.624
  recA Acinetobacter baumannii D1279779

62.857

98.87

0.621
  recA Acinetobacter baylyi ADP1

62.108

99.153

0.616
  recA Neisseria gonorrhoeae MS11

65.269

94.35

0.616
  recA Neisseria gonorrhoeae MS11

65.269

94.35

0.616
  recA Neisseria gonorrhoeae strain FA1090

65.269

94.35

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.601

90.678

0.613
  recA Vibrio cholerae strain A1552

67.601

90.678

0.613
  recA Glaesserella parasuis strain SC1401

64.458

93.785

0.605
  recA Pseudomonas stutzeri DSM 10701

62.941

96.045

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.018

95.48

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.22

92.373

0.593
  recA Helicobacter pylori 26695

63.467

91.243

0.579
  recA Helicobacter pylori strain NCTC11637

63.158

91.243

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571

Multiple sequence alignment