Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KO02_RS02555 Genome accession   NZ_CP009278
Coordinates   544762..545781 (-) Length   339 a.a.
NCBI ID   WP_038695581.1    Uniprot ID   -
Organism   Sphingobacterium sp. ML3W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 539762..550781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO02_RS02535 (KO02_02630) msrA 540246..540911 (+) 666 WP_038695572.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KO02_RS02540 (KO02_02635) pruA 541009..542646 (+) 1638 WP_038695574.1 L-glutamate gamma-semialdehyde dehydrogenase -
  KO02_RS02545 (KO02_02640) - 542721..543905 (-) 1185 WP_038695577.1 metallophosphoesterase family protein -
  KO02_RS02550 (KO02_02645) - 543909..544685 (-) 777 WP_038695579.1 endonuclease/exonuclease/phosphatase family protein -
  KO02_RS02555 (KO02_02650) recA 544762..545781 (-) 1020 WP_038695581.1 recombinase RecA Machinery gene
  KO02_RS02560 (KO02_02655) nth 545858..546532 (-) 675 WP_038695583.1 endonuclease III -
  KO02_RS02565 (KO02_02660) - 546586..546768 (-) 183 WP_038695585.1 hypothetical protein -
  KO02_RS02570 (KO02_02665) - 546838..548469 (-) 1632 WP_038695587.1 S8 family serine peptidase -
  KO02_RS02575 (KO02_02670) - 548636..550768 (+) 2133 WP_081918290.1 S9 family peptidase -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36435.80 Da        Isoelectric Point: 4.9436

>NTDB_id=127965 KO02_RS02555 WP_038695581.1 544762..545781(-) (recA) [Sphingobacterium sp. ML3W]
MSNPDKLKALQLTLDKLEKSYGKGAIMKLGDTTVDPIESISTGSLGLDIALGIGGVPKGRVIEIYGPESSGKTTLATHII
AEAQKQGGIAAFIDAEHAFDKYYAQKLGVDVENLLIAQPDNGEQALEIADNLIRSGAIDIIVIDSVAALVPKAEIEGEMG
DSKMGLQARLMSQALRKLTGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN
RVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYNIIKKAGSWFSYGETKLGQGRDAVKSLLHDNPDLADELE
AKIRAEVSGIDPNLALEEG

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=127965 KO02_RS02555 WP_038695581.1 544762..545781(-) (recA) [Sphingobacterium sp. ML3W]
ATGAGCAATCCAGATAAATTAAAAGCATTACAGCTTACATTAGATAAATTAGAGAAATCATATGGTAAAGGCGCCATAAT
GAAATTAGGAGATACGACTGTTGACCCAATTGAATCAATCTCTACAGGTTCTTTAGGTCTTGATATCGCATTGGGTATTG
GGGGCGTTCCTAAAGGTCGTGTCATTGAGATTTATGGTCCTGAATCTTCTGGTAAAACAACTCTAGCGACACATATCATT
GCTGAAGCTCAAAAACAAGGCGGTATTGCTGCATTTATCGATGCAGAGCATGCTTTTGATAAATACTACGCTCAAAAATT
AGGCGTTGATGTAGAAAATTTATTAATTGCTCAACCTGATAACGGCGAGCAGGCTTTAGAAATTGCCGATAATTTAATTC
GTTCGGGAGCTATTGACATTATTGTCATTGACTCCGTTGCGGCTTTAGTTCCTAAGGCAGAGATTGAAGGTGAGATGGGT
GATTCAAAAATGGGACTTCAAGCCCGTTTAATGTCTCAAGCATTACGTAAATTAACTGGTACTATTTCGAAAACAAACTG
TTGTTGTATTTTCATCAACCAACTTCGTGAAAAAATCGGTGTTATGTTTGGTAATCCAGAGACAACAACTGGTGGTAACG
CATTAAAATTCTACGCTTCTGTACGTTTGGATATTCGCCGTACTTCTCAGATAAAAGATTCAGATGAAGTATCTGGTAAC
CGTGTAAAAGTAAAAATCGTTAAAAATAAAGTAGCTCCTCCATTCCGTATCGCTGAATTTGATATCATGTTTGGTGAAGG
TATTTCTAAAGTTGGTGAAATCATCGATTTAGGAGTTGAATACAATATCATTAAGAAAGCGGGTTCATGGTTTAGCTATG
GCGAAACAAAATTGGGACAAGGTCGTGATGCTGTAAAATCATTATTACATGACAACCCTGATTTAGCCGATGAATTGGAA
GCTAAAATTAGAGCTGAGGTTTCTGGCATTGATCCTAACCTAGCTTTAGAAGAAGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

73.414

97.64

0.717
  recA Ralstonia pseudosolanacearum GMI1000

68.671

93.215

0.64
  recA Neisseria gonorrhoeae MS11

67.081

94.985

0.637
  recA Neisseria gonorrhoeae MS11

67.081

94.985

0.637
  recA Neisseria gonorrhoeae strain FA1090

67.081

94.985

0.637
  recA Bacillus subtilis subsp. subtilis str. 168

65.35

97.05

0.634
  recA Glaesserella parasuis strain SC1401

64.759

97.935

0.634
  recA Helicobacter pylori 26695

65.644

96.165

0.631
  recA Helicobacter pylori strain NCTC11637

65.337

96.165

0.628
  recA Acinetobacter baumannii D1279779

63.664

98.23

0.625
  recA Acinetobacter baylyi ADP1

65.635

95.28

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

94.69

0.619
  recA Pseudomonas stutzeri DSM 10701

64.087

95.28

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.5

94.395

0.59
  recA Vibrio cholerae strain A1552

62.5

94.395

0.59
  recA Streptococcus pyogenes NZ131

61.42

95.575

0.587
  recA Streptococcus mitis SK321

59.05

99.41

0.587
  recA Streptococcus mitis NCTC 12261

59.819

97.64

0.584
  recA Streptococcus pneumoniae TIGR4

59.517

97.64

0.581
  recA Streptococcus pneumoniae Rx1

59.517

97.64

0.581
  recA Streptococcus pneumoniae D39

59.517

97.64

0.581
  recA Streptococcus pneumoniae R6

59.517

97.64

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

60.308

95.87

0.578
  recA Lactococcus lactis subsp. cremoris KW2

60.248

94.985

0.572
  recA Streptococcus mutans UA159

58.282

96.165

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.481

95.575

0.54

Multiple sequence alignment