Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPYLSS1_RS00780 Genome accession   NZ_CP009259
Coordinates   152854..153897 (+) Length   347 a.a.
NCBI ID   WP_000963118.1    Uniprot ID   -
Organism   Helicobacter pylori SS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 147854..158897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLSS1_RS00745 (HPYLSS1_00137) - 148446..148664 (+) 219 WP_001864632.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HPYLSS1_RS00750 (HPYLSS1_00138) ccoP 148666..149544 (+) 879 WP_077231686.1 cytochrome-c oxidase, cbb3-type subunit III -
  HPYLSS1_RS00755 (HPYLSS1_00139) - 149555..149761 (+) 207 WP_000670506.1 DUF4006 family protein -
  HPYLSS1_RS00760 (HPYLSS1_00141) - 149862..150446 (+) 585 WP_077231687.1 hypothetical protein -
  HPYLSS1_RS00765 (HPYLSS1_00142) - 150458..151048 (+) 591 WP_077231688.1 hypothetical protein -
  HPYLSS1_RS00770 (HPYLSS1_00143) - 151128..151895 (+) 768 WP_077231689.1 hypothetical protein -
  HPYLSS1_RS00775 (HPYLSS1_00144) - 151892..152755 (-) 864 WP_077231690.1 menaquinone biosynthesis family protein -
  HPYLSS1_RS00780 (HPYLSS1_00145) recA 152854..153897 (+) 1044 WP_000963118.1 recombinase RecA Machinery gene
  HPYLSS1_RS00785 (HPYLSS1_00146) eno 153908..155188 (+) 1281 WP_077231691.1 phosphopyruvate hydratase -
  HPYLSS1_RS00790 (HPYLSS1_00147) - 155181..155456 (+) 276 WP_000146212.1 hypothetical protein -
  HPYLSS1_RS00795 (HPYLSS1_00148) - 155467..156063 (+) 597 WP_173668922.1 AMIN domain-containing protein -
  HPYLSS1_RS00800 (HPYLSS1_00149) - 156068..156556 (+) 489 WP_077231693.1 shikimate kinase -
  HPYLSS1_RS00805 (HPYLSS1_00150) - 156578..157534 (+) 957 WP_000952282.1 PDC sensor domain-containing protein -
  HPYLSS1_RS00810 (HPYLSS1_00151) - 157531..158649 (-) 1119 WP_077231694.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37639.37 Da        Isoelectric Point: 5.3408

>NTDB_id=127783 HPYLSS1_RS00780 WP_000963118.1 152854..153897(+) (recA) [Helicobacter pylori SS1]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=127783 HPYLSS1_RS00780 WP_000963118.1 152854..153897(+) (recA) [Helicobacter pylori SS1]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGTTTGCATATT
ATTGCAGAATGCCAAAAAAATGGTGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGACGTGTATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCAAGCACGGGCGAAGAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTGGTGGTGGTGGATTCGGTGGCGGCCCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAAATGAA
CACTACTCTCGTTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACAGGGG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCGCTTTAAAACAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCTAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGACTATGGCGTGAAATTAGACATTGTGGATAAGAGCGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGTCGAGAAAACGCTAAAGCCTTACTAAAAGAAGATAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

98.847

100

0.988
  recA Helicobacter pylori 26695

98.271

100

0.983
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.049

94.524

0.738
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

95.677

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

64.308

93.66

0.602
  recA Acinetobacter baumannii D1279779

63.303

94.236

0.597
  recA Acinetobacter baylyi ADP1

62.997

94.236

0.594
  recA Ralstonia pseudosolanacearum GMI1000

61.012

96.83

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.417

96.83

0.585
  recA Vibrio cholerae strain A1552

60.417

96.83

0.585
  recA Pseudomonas stutzeri DSM 10701

59.357

98.559

0.585
  recA Glaesserella parasuis strain SC1401

60.366

94.524

0.571
  recA Streptococcus pneumoniae Rx1

55.271

100

0.559
  recA Streptococcus pneumoniae D39

55.271

100

0.559
  recA Streptococcus pneumoniae R6

55.271

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.271

100

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

54.342

100

0.559
  recA Streptococcus pyogenes NZ131

56.97

95.101

0.542
  recA Lactococcus lactis subsp. cremoris KW2

57.143

94.813

0.542
  recA Streptococcus mitis NCTC 12261

56.839

94.813

0.539
  recA Streptococcus mitis SK321

56.535

94.813

0.536
  recA Streptococcus mutans UA159

55.389

96.254

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

93.948

0.522

Multiple sequence alignment