Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IX88_RS11850 Genome accession   NZ_CP009256
Coordinates   2536409..2537458 (+) Length   349 a.a.
NCBI ID   WP_038405604.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2531409..2542458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX88_RS11815 (IX88_11990) gigD 2532796..2533245 (+) 450 WP_032000106.1 Lrp/AsnC family transcriptional regulator GigD -
  IX88_RS11820 (IX88_11995) - 2533291..2533827 (+) 537 WP_000573225.1 GNAT family N-acetyltransferase -
  IX88_RS11825 (IX88_12000) - 2533879..2534172 (-) 294 WP_000689660.1 hypothetical protein -
  IX88_RS11830 (IX88_12005) - 2534287..2534523 (-) 237 WP_000525041.1 hypothetical protein -
  IX88_RS11835 (IX88_12010) - 2534622..2534981 (-) 360 WP_000798357.1 YcgJ family protein -
  IX88_RS11840 (IX88_12015) - 2535153..2535839 (+) 687 WP_002007001.1 HAD-IA family hydrolase -
  IX88_RS11845 (IX88_12020) - 2535823..2536263 (+) 441 WP_000040963.1 RNA-binding S4 domain-containing protein -
  IX88_RS11850 (IX88_12025) recA 2536409..2537458 (+) 1050 WP_038405604.1 recombinase RecA Machinery gene
  IX88_RS11855 (IX88_12030) - 2537512..2537994 (+) 483 WP_000476756.1 regulatory protein RecX -
  IX88_RS11865 (IX88_12040) - 2538421..2539305 (+) 885 WP_032000111.1 YbgF trimerization domain-containing protein -
  IX88_RS11870 (IX88_12045) lpxA 2539361..2540149 (-) 789 WP_000064875.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  IX88_RS11875 (IX88_12050) fabZ 2540146..2540631 (-) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IX88_RS11880 (IX88_12055) lpxD 2540638..2541708 (-) 1071 WP_032000114.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  IX88_RS11885 (IX88_12060) - 2541713..2542216 (-) 504 WP_001037943.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37921.27 Da        Isoelectric Point: 4.7769

>NTDB_id=127681 IX88_RS11850 WP_038405604.1 2536409..2537458(+) (recA) [Acinetobacter baumannii strain AB31]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENTQIAEEIER
NIREQLLTTGTNSAVQIEDEEEPDLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=127681 IX88_RS11850 WP_038405604.1 2536409..2537458(+) (recA) [Acinetobacter baumannii strain AB31]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGCCAAATTGAGAAGCAATTTGGTAAAAATACGGTTATGCG
TCTTGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACTACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAATCTGGTGGTACATGTGCTTTCATTGATGCTGAGCACGCCCTAGACCCTCAATATGCACGCAAACTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAATGGTGAGCAAGCACTTGAAATTGCTGACATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCACTTACCCCTAAAGCAGAAATCGAAGGTGAGATGGGTGAC
TCTCATATGGGTCTACAAGCACGTCTTATGAGCCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACCACTGGTGGTAACGCTC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAGAACAAAATGGCTCCTCCGTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAACTAGGTGAACTTGTAGATTTAGCTGTACAACAGGATATCGTACAAAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTAATTCGCTATTTTGAAGAAAATACTCAAATAGCTGAAGAAATTGAACGT
AATATCCGTGAACAATTGCTGACTACAGGCACAAATAGTGCAGTTCAAATTGAAGATGAAGAAGAGCCAGATCTTTTATT
AGAATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

99.427

100

0.994
  recA Acinetobacter baylyi ADP1

93.084

99.427

0.926
  recA Pseudomonas stutzeri DSM 10701

75.375

95.415

0.719
  recA Vibrio cholerae strain A1552

73.7

93.696

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.696

0.691
  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665
  recA Ralstonia pseudosolanacearum GMI1000

70.031

93.696

0.656
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

98.281

0.61
  recA Helicobacter pylori strain NCTC11637

63.095

96.275

0.607
  recA Helicobacter pylori 26695

62.798

96.275

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605
  recA Streptococcus pyogenes NZ131

59.207

100

0.599
  recA Streptococcus mitis NCTC 12261

60.704

97.708

0.593
  recA Streptococcus mutans UA159

59.312

100

0.593
  recA Streptococcus mitis SK321

60.411

97.708

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.41

0.587
  recA Streptococcus pneumoniae D39

61.963

93.41

0.579
  recA Streptococcus pneumoniae R6

61.963

93.41

0.579
  recA Streptococcus pneumoniae TIGR4

61.963

93.41

0.579
  recA Streptococcus pneumoniae Rx1

61.963

93.41

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

56.56

98.281

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544

Multiple sequence alignment