Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IX83_RS04770 Genome accession   NZ_CP009238
Coordinates   1112468..1113544 (+) Length   358 a.a.
NCBI ID   WP_038499785.1    Uniprot ID   A0A077DI03
Organism   Basilea psittacipulmonis DSM 24701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1107468..1118544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX83_RS04745 (IX83_04915) - 1108075..1108857 (-) 783 WP_038499779.1 ABC transporter ATP-binding protein -
  IX83_RS04750 (IX83_04920) hisM 1108866..1109576 (-) 711 WP_038501584.1 histidine ABC transporter permease HisM -
  IX83_RS04755 (IX83_04925) - 1109612..1110331 (-) 720 WP_051919320.1 ABC transporter permease -
  IX83_RS04760 (IX83_04930) - 1110548..1111333 (-) 786 WP_038499781.1 transporter substrate-binding domain-containing protein -
  IX83_RS04765 (IX83_04935) - 1111352..1112245 (-) 894 WP_038499783.1 recombination-associated protein RdgC -
  IX83_RS04770 (IX83_04940) recA 1112468..1113544 (+) 1077 WP_038499785.1 recombinase RecA Machinery gene
  IX83_RS04775 (IX83_04945) recX 1113619..1114053 (+) 435 WP_038499787.1 recombination regulator RecX -
  IX83_RS09180 - 1114058..1114207 (-) 150 WP_077315824.1 IS3 family transposase -
  IX83_RS04780 (IX83_04950) - 1114276..1115841 (-) 1566 WP_038498512.1 transposase -
  IX83_RS04785 (IX83_04955) - 1115924..1116250 (-) 327 WP_038499788.1 hypothetical protein -
  IX83_RS04790 (IX83_04960) - 1116606..1117808 (-) 1203 WP_038499790.1 amino acid aminotransferase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38734.12 Da        Isoelectric Point: 4.9848

>NTDB_id=127498 IX83_RS04770 WP_038499785.1 1112468..1113544(+) (recA) [Basilea psittacipulmonis DSM 24701]
MSSKKTTDKAQSERDKALANALSQIEKQFGTGSIMRYGDNQVQHDIQVVSTGSLGLDIALGIGGLPRGRVIEIYGPESSG
KTTLTLHVVAEMQKIGGTCVFVDAEHALDIQYAKKLGVDLDKLLISQPDTGEQALEITDALVRSNSVDLIVVDSVAALTP
RAEIEGEMGDNLPGLQARLMSQALRKLTASIKRSNCTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRKAGSI
KKGEEILGSETKVKVVKNKVAPPFKTATFDIMYGTGISREGEIIDLGVKAGIIDKAGAWYSYNGEKIGQGKDNVRELLKD
NPALSEEIERKIRESVGVLTADYEDESEETILGDDIEN

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=127498 IX83_RS04770 WP_038499785.1 1112468..1113544(+) (recA) [Basilea psittacipulmonis DSM 24701]
ATGTCTAGTAAGAAAACTACTGATAAAGCACAGTCTGAACGCGATAAGGCATTAGCGAACGCATTATCACAGATTGAAAA
ACAATTTGGCACAGGATCCATCATGCGATATGGTGATAACCAGGTACAGCACGATATTCAGGTTGTATCGACTGGTTCTC
TTGGTTTAGATATTGCATTAGGTATTGGGGGATTACCTAGAGGCCGTGTGATCGAAATTTACGGACCTGAATCATCAGGT
AAAACCACGTTAACGCTACATGTTGTTGCTGAAATGCAGAAGATTGGTGGCACCTGCGTATTTGTGGATGCTGAACATGC
ATTAGATATACAGTATGCGAAAAAATTAGGCGTTGACTTAGATAAGTTGCTTATCTCTCAGCCTGATACAGGTGAACAGG
CATTAGAGATTACCGACGCATTAGTACGCTCGAACTCTGTCGATTTAATCGTTGTTGACTCGGTTGCCGCATTGACACCT
CGTGCAGAAATTGAAGGCGAGATGGGAGATAACCTCCCTGGCCTACAAGCTCGTTTGATGAGCCAAGCACTAAGAAAATT
AACCGCTTCGATTAAACGTTCTAACTGCACCGTTATCTTCATTAATCAGATCCGTATGAAGATTGGCGTGATGTTTGGTA
ACCCTGAAACCACAACAGGCGGTAACGCACTAAAATTCTACTCATCTGTTCGATTAGATATTCGCAAAGCAGGCAGTATT
AAGAAAGGCGAAGAGATACTTGGTAGCGAGACGAAAGTTAAAGTCGTTAAGAATAAGGTAGCTCCTCCATTTAAAACCGC
TACGTTTGACATTATGTATGGCACAGGTATTTCTCGCGAAGGCGAAATCATTGACTTGGGTGTAAAAGCAGGCATTATCG
ATAAGGCAGGTGCTTGGTACAGCTATAATGGCGAGAAAATCGGCCAAGGTAAAGATAATGTTCGTGAATTACTAAAAGAC
AACCCTGCTCTATCTGAAGAAATCGAACGAAAAATCCGTGAAAGCGTTGGTGTATTGACTGCCGACTACGAGGATGAATC
AGAAGAGACTATTTTAGGCGATGATATAGAAAATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077DI03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

78.662

87.709

0.69
  recA Acinetobacter baumannii D1279779

69.565

96.369

0.67
  recA Acinetobacter baylyi ADP1

69.912

94.693

0.662
  recA Glaesserella parasuis strain SC1401

66.106

99.721

0.659
  recA Neisseria gonorrhoeae MS11

69.322

94.693

0.656
  recA Neisseria gonorrhoeae strain FA1090

69.322

94.693

0.656
  recA Neisseria gonorrhoeae MS11

69.322

94.693

0.656
  recA Pseudomonas stutzeri DSM 10701

70.213

91.899

0.645
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.093

89.665

0.628
  recA Vibrio cholerae strain A1552

70.093

89.665

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.127

94.693

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

94.972

0.598
  recA Helicobacter pylori 26695

64.724

91.061

0.589
  recA Helicobacter pylori strain NCTC11637

64.417

91.061

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

59.544

98.045

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

91.341

0.581
  recA Streptococcus pneumoniae Rx1

58.427

99.441

0.581
  recA Streptococcus pneumoniae TIGR4

58.427

99.441

0.581
  recA Streptococcus pneumoniae R6

58.427

99.441

0.581
  recA Streptococcus pneumoniae D39

58.427

99.441

0.581
  recA Streptococcus mutans UA159

58.807

98.324

0.578
  recA Streptococcus mitis SK321

58.79

96.927

0.57
  recA Streptococcus pyogenes NZ131

60.177

94.693

0.57
  recA Lactococcus lactis subsp. cremoris KW2

56.983

100

0.57
  recA Streptococcus mitis NCTC 12261

59.941

94.134

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.692

90.782

0.542

Multiple sequence alignment