Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NJ8700_RS09005 Genome accession   NZ_CP009230
Coordinates   1927116..1928177 (-) Length   353 a.a.
NCBI ID   WP_005702349.1    Uniprot ID   A0AAP7GVF3
Organism   Aggregatibacter aphrophilus NJ8700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922116..1933177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS08980 (NJ8700_09170) tal 1922420..1923373 (+) 954 WP_005702343.1 transaldolase -
  NJ8700_RS08985 (NJ8700_09175) tkt 1923507..1925504 (+) 1998 WP_012771875.1 transketolase -
  NJ8700_RS08990 (NJ8700_09180) - 1925679..1926032 (+) 354 WP_005702345.1 c-type lysozyme inhibitor -
  NJ8700_RS08995 (NJ8700_09185) - 1926106..1926495 (-) 390 WP_012771876.1 RidA family protein -
  NJ8700_RS09000 (NJ8700_09190) recX 1926579..1927037 (-) 459 WP_005702347.1 recombination regulator RecX -
  NJ8700_RS09005 (NJ8700_09195) recA 1927116..1928177 (-) 1062 WP_005702349.1 recombinase RecA Machinery gene
  NJ8700_RS09010 (NJ8700_09200) - 1928312..1930237 (-) 1926 WP_012771877.1 ABC transporter ATP-binding protein -
  NJ8700_RS09015 (NJ8700_09205) - 1930318..1930935 (+) 618 WP_005702353.1 MarC family protein -
  NJ8700_RS11265 (NJ8700_09210) - 1931151..1931510 (-) 360 WP_012771878.1 LysE family transporter -
  NJ8700_RS09025 (NJ8700_09215) - 1931681..1932037 (+) 357 WP_012771879.1 helix-turn-helix transcriptional regulator -
  NJ8700_RS09030 (NJ8700_09220) - 1932037..1932564 (+) 528 WP_044055273.1 ImmA/IrrE family metallo-endopeptidase -
  NJ8700_RS11400 - 1932802..1932945 (+) 144 WP_012771880.1 hypothetical protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38100.59 Da        Isoelectric Point: 4.8857

>NTDB_id=127414 NJ8700_RS09005 WP_005702349.1 1927116..1928177(-) (recA) [Aggregatibacter aphrophilus NJ8700]
MATQEEKQKALEAALGQIEKQFGKGAIMKLGDSQKLDIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAEAQKNGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTSQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
NETRVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYQNEKIGQGKTNAMKWLKDNPEQAKII
ESTLRDELLAHPESAITADSDNEAQGNIESDFE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=127414 NJ8700_RS09005 WP_005702349.1 1927116..1928177(-) (recA) [Aggregatibacter aphrophilus NJ8700]
ATGGCAACTCAAGAAGAAAAACAAAAAGCGCTCGAAGCCGCGTTAGGTCAAATTGAAAAACAATTTGGTAAAGGCGCCAT
CATGAAATTAGGCGATAGCCAAAAATTAGATATTGAAGCCATTTCCACCGGTTCATTCGGTCTTGATTTGGCATTAGGCA
TCGGTGGTTTACCGATGGGACGTATTGTTGAGATCTTCGGGCCGGAATCTTCCGGTAAAACCACCTTAACCCTTTCTGTG
ATTGCCGAGGCACAAAAAAATGGTAAAACCTGTGCCTTTATCGATGCGGAGCACGCCTTAGACCCAATTTATGCGTCTAA
ATTAGGTGTAGATGTGAAAGAGTTATTGGTGTCTCAACCGGATAACGGCGAACAAGCCCTAGAAATTTGTGATGCATTAG
TACGCTCCGGTGCTGTGGATGTGGTTATCGTTGACTCGGTTGCCGCATTAACCCCGAAAGCCGAAATTGAAGGTGATATG
GGGGATTCGCACATGGGCTTGCAAGCGCGTTTAATGTCCCAAGCCTTGCGTAAATTAACCAGCCAAATTAAAAATGCGAA
TTGCTTGGTGATTTTCATTAACCAAATCCGTATGAAAATCGGCGTGATGTTCGGTAATCCGGAAACTACCACCGGCGGTA
ACGCACTTAAATTCTATGCGTCCGTACGTTTGGATATTCGCCGCATAGGTGCCATTAAAGAAGGTGATGAAGTGGTCGGA
AATGAAACCCGTGTGAAAGTAGTGAAAAACAAAGTCGCACCGCCGTTCCGTCAAGTGGACTTCCAAATTCTGTATGGCGA
AGGTATTTCTAAAGAAAGCGAACTGATTGATTTAGGTGTGAAACACAAGCTGATCAGTAAAGCTGGCGCGTGGTATGCTT
ATCAGAATGAGAAAATCGGTCAGGGCAAAACCAATGCGATGAAATGGTTAAAAGATAACCCTGAACAAGCGAAAATCATT
GAAAGTACGTTGCGTGATGAGTTATTGGCTCACCCGGAATCTGCCATTACGGCTGACTCGGACAACGAAGCGCAAGGCAA
TATCGAGAGTGATTTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

74.785

98.867

0.739
  recA Pseudomonas stutzeri DSM 10701

74.128

97.45

0.722
  recA Vibrio cholerae strain A1552

76.364

93.484

0.714
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.364

93.484

0.714
  recA Neisseria gonorrhoeae strain FA1090

71.137

97.167

0.691
  recA Neisseria gonorrhoeae MS11

71.137

97.167

0.691
  recA Neisseria gonorrhoeae MS11

71.137

97.167

0.691
  recA Acinetobacter baylyi ADP1

68.023

97.45

0.663
  recA Acinetobacter baumannii D1279779

71.385

92.068

0.657
  recA Ralstonia pseudosolanacearum GMI1000

71.562

90.652

0.649
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.565

94.334

0.609
  recA Helicobacter pylori strain NCTC11637

63.772

94.618

0.603
  recA Helicobacter pylori 26695

63.174

94.618

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

96.884

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

63.665

91.218

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.08

92.635

0.575
  recA Streptococcus mitis SK321

58.841

97.734

0.575
  recA Streptococcus pneumoniae Rx1

58.309

97.167

0.567
  recA Streptococcus pneumoniae TIGR4

58.309

97.167

0.567
  recA Streptococcus pneumoniae D39

58.309

97.167

0.567
  recA Streptococcus pneumoniae R6

58.309

97.167

0.567
  recA Streptococcus mitis NCTC 12261

60.802

91.785

0.558
  recA Streptococcus mutans UA159

59.692

92.068

0.55
  recA Streptococcus pyogenes NZ131

58.462

92.068

0.538
  recA Latilactobacillus sakei subsp. sakei 23K

60

87.819

0.527
  recA Lactococcus lactis subsp. cremoris KW2

56.173

91.785

0.516

Multiple sequence alignment