Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NCDO2118_RS02085 Genome accession   NZ_CP009054
Coordinates   405745..406908 (+) Length   387 a.a.
NCBI ID   WP_012897202.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis NCDO 2118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 400745..411908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCDO2118_RS02070 (NCDO2118_0414) era 401978..402889 (+) 912 WP_003131632.1 GTPase Era -
  NCDO2118_RS02075 (NCDO2118_0415) asnB 402987..404579 (+) 1593 WP_010905297.1 asparagine synthase B -
  NCDO2118_RS02080 (NCDO2118_0416) mutM 404773..405591 (+) 819 WP_012897201.1 DNA-formamidopyrimidine glycosylase -
  NCDO2118_RS02085 (NCDO2118_0417) recA 405745..406908 (+) 1164 WP_012897202.1 recombinase RecA Machinery gene
  NCDO2118_RS02090 (NCDO2118_0418) - 406921..408294 (-) 1374 WP_012897203.1 amino acid permease -
  NCDO2118_RS02095 (NCDO2118_0419) - 408363..409742 (-) 1380 WP_012897204.1 amino acid permease -
  NCDO2118_RS02100 (NCDO2118_0420) - 409889..410269 (+) 381 WP_010905299.1 YlbF family regulator -
  NCDO2118_RS02105 (NCDO2118_0421) - 410256..410570 (+) 315 WP_003131624.1 YlbG family protein -
  NCDO2118_RS02110 (NCDO2118_0422) - 410800..411318 (+) 519 WP_003131623.1 hypothetical protein -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41475.33 Da        Isoelectric Point: 5.1619

>NTDB_id=126418 NCDO2118_RS02085 WP_012897202.1 405745..406908(+) (recA) [Lactococcus lactis subsp. lactis NCDO 2118]
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTGELLNIAVDEGIIKKSGAWFAYNDEKIGQGA
EKAKNYLKEHQEIFDEIDHKVRAAHGLLDEAEVVETTEDTSTKAKATKAKKEEKVVETEEIELELED

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=126418 NCDO2118_RS02085 WP_012897202.1 405745..406908(+) (recA) [Lactococcus lactis subsp. lactis NCDO 2118]
TTGGCAACAAAGAAAAAAACAAATTTTGATGATATTACCAAAAAATATGGCGCTGAACGTGACAAAGCTTTGGCAGATGC
ACTTGCTCTGATTGAAAAAGACTTTGGGAAAGGTTCACTTATGCGTCTTGGCGAAGCAGCCAACCAGAAAGTGTCAGTAG
TAAGTTCAGGCTCACTTGCACTTGATATTGCGCTTGGTGCAGGTGGATATCCTAAAGGACGTATCGTTGAAATCTACGGA
CCAGAATCTTCTGGTAAAACAACAGTCGCTCTTCATGCCGTTGCAGCGGTTCAAAAAGAAGGTGGAATTGCAGCCTTTAT
CGATGCTGAAAATGCGCTTGACCCAGAATATGCAAAAGCGCTCGGTGTCAATATCGATGAACTTTTACTTTCACAACCAG
ACTATGGTGAACAAGGGCTTCAAATTGCTGAAAAATTGATTACATCTGGTGCAGTTGACTTAGTTGTTATTGACTCAGTT
GCAGCTTTGGTACCTAAAGCCGAAATTGACGGTGAAATTGGTGACAGTTCAGTTGGGCTTCAAGCTCGTATGATGTCACA
AGCCATGCGTAAACTTGCAGGACATATTAATAAAACAAAAACAACAGCTATTTTCATCAACCAATTGCGTGAAAAAGTTG
GGGTTATGTTTGGTTCGCCAGAAACAACACCTGGTGGTCGTGCATTGAAATTCTACGCTTCTGTACGTCTTGATGTACGT
GGTTCAACAAAAATCGAAGAAGGTTCTGGAGATAACAAGACCCAAATCGGTAAAATCACAAAAATCAAAGTCGTTAAAAA
TAAAGTGGCTCCACCATTCAAGGTTGCTCTCGTAGATATCATGTTTGGTGAAGGAATTTCAAGAACCGGTGAACTTTTAA
ACATTGCTGTTGATGAAGGAATCATCAAAAAATCAGGCGCTTGGTTTGCTTACAATGACGAAAAAATTGGTCAAGGAGCA
GAAAAAGCGAAGAACTATCTCAAAGAACATCAAGAAATCTTTGATGAAATTGACCATAAAGTTCGTGCCGCACACGGTCT
TCTTGATGAAGCAGAAGTAGTAGAAACTACAGAAGATACTTCAACAAAAGCTAAGGCAACTAAAGCTAAAAAAGAAGAAA
AAGTAGTTGAAACTGAAGAAATTGAACTCGAACTTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

98.3

91.214

0.897
  recA Streptococcus pneumoniae D39

75.844

99.483

0.755
  recA Streptococcus pneumoniae R6

75.844

99.483

0.755
  recA Streptococcus pneumoniae TIGR4

75.844

99.483

0.755
  recA Streptococcus pneumoniae Rx1

75.844

99.483

0.755
  recA Streptococcus mitis NCTC 12261

74.545

99.483

0.742
  recA Streptococcus mitis SK321

74.026

99.483

0.736
  recA Streptococcus mutans UA159

73.698

99.225

0.731
  recA Streptococcus pyogenes NZ131

79.251

89.664

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

69.298

88.372

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

85.271

0.558
  recA Glaesserella parasuis strain SC1401

54.545

99.483

0.543
  recA Vibrio cholerae strain A1552

59.42

89.147

0.53
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.42

89.147

0.53
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

85.013

0.519
  recA Neisseria gonorrhoeae strain FA1090

59.639

85.788

0.512
  recA Neisseria gonorrhoeae MS11

59.639

85.788

0.512
  recA Neisseria gonorrhoeae MS11

59.639

85.788

0.512
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

84.238

0.501
  recA Acinetobacter baylyi ADP1

59.752

83.463

0.499
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.716

84.496

0.496
  recA Pseudomonas stutzeri DSM 10701

58.951

83.721

0.494
  recA Helicobacter pylori strain NCTC11637

58.055

85.013

0.494
  recA Helicobacter pylori 26695

58.055

85.013

0.494
  recA Acinetobacter baumannii D1279779

59.133

83.463

0.494
  recA Ralstonia pseudosolanacearum GMI1000

60.252

81.912

0.494

Multiple sequence alignment