Detailed information NTG0125518

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: HZ99_RS10865
• Genome accession: NZ_CP008896
• Coordinates: 2480955..2482013 (-)
• Length: 352 a.a.
• NCBI ID: WP_038442948.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain UK4
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2480955..2496015	2480955..2482013	within	0

Gene organization within MGE regions

Location: 2480955..2496015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZ99_RS10865 (HZ99_11155)	recA	2480955..2482013 (-)	1059	WP_038442948.1	recombinase RecA	Machinery gene
HZ99_RS10870 (HZ99_11160)	-	2482097..2482597 (-)	501	WP_038442950.1	CinA family protein	-
HZ99_RS10875 (HZ99_11165)	-	2482679..2483185 (-)	507	WP_038442952.1	lysis system i-spanin subunit Rz	-
HZ99_RS10880 (HZ99_11170)	-	2483176..2483724 (-)	549	WP_038448049.1	glycoside hydrolase family 19 protein	-
HZ99_RS10885 (HZ99_11175)	-	2483745..2484755 (-)	1011	WP_038442953.1	contractile injection system protein, VgrG/Pvc8 family	-
HZ99_RS10890 (HZ99_11180)	-	2484765..2484977 (-)	213	WP_038442954.1	tail protein X	-
HZ99_RS10895 (HZ99_11185)	-	2484970..2485353 (-)	384	WP_038442956.1	phage tail protein	-
HZ99_RS27745 (HZ99_11190)	-	2485353..2486708 (-)	1356	WP_038442958.1	hypothetical protein	-
HZ99_RS10905 (HZ99_11195)	-	2486837..2487403 (-)	567	WP_038442959.1	phage tail assembly protein	-
HZ99_RS10910 (HZ99_11200)	-	2487584..2488090 (-)	507	WP_038442961.1	phage major tail tube protein	-
HZ99_RS10915 (HZ99_11205)	-	2488090..2489256 (-)	1167	WP_038442962.1	tail protein	-
HZ99_RS10920 (HZ99_11210)	-	2489259..2489462 (-)	204	WP_038442963.1	hypothetical protein	-
HZ99_RS10925 (HZ99_11215)	-	2489555..2489824 (-)	270	WP_038442964.1	ubiquitin-associated domain-containing protein	-
HZ99_RS10930 (HZ99_11220)	-	2489827..2490672 (-)	846	WP_038442965.1	hypothetical protein	-
HZ99_RS10935 (HZ99_11225)	-	2490712..2491242 (-)	531	WP_038442967.1	phage tail protein	-
HZ99_RS10940 (HZ99_11230)	-	2491239..2491874 (-)	636	WP_038442968.1	phage tail protein I	-
HZ99_RS10945 (HZ99_11235)	-	2491871..2492866 (-)	996	WP_038442969.1	baseplate J/gp47 family protein	-
HZ99_RS10950 (HZ99_11240)	-	2492863..2493195 (-)	333	WP_038442971.1	phage baseplate protein	-
HZ99_RS10955 (HZ99_11245)	-	2493205..2493816 (-)	612	WP_038442972.1	phage baseplate assembly protein V	-
HZ99_RS10960 (HZ99_11250)	-	2493820..2494332 (-)	513	WP_038442974.1	hypothetical protein	-
HZ99_RS10965 (HZ99_11255)	-	2494354..2494686 (-)	333	WP_032858418.1	phage holin family protein	-
HZ99_RS10970 (HZ99_11260)	-	2495287..2496015 (-)	729	WP_080727704.1	LexA family transcriptional regulator	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37527.03 Da
• Isoelectric Point: 5.5038

>NTDB_id=125518 HZ99_RS10865 WP_038442948.1 2480955..2482013(-) (recA) [Pseudomonas fluorescens strain UK4]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLQDNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVDDMAEADADS

Nucleotide

• Length: 1059 bp

>NTDB_id=125518 HZ99_RS10865 WP_038442948.1 2480955..2482013(-) (recA) [Pseudomonas fluorescens strain UK4]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAGGGCCGTATCGTTGAAATCTACGGTCCAGAATCTTCTGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCCCAAAAAATGGGCGCCACCTGCGCGTTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCAGGCAAGCTGGG
CGTCAATGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGTGAACAAGCGTTGGAAATCACTGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCATTGGTACCGAAGGCCGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGCCTCATGTCCCAGGCCCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGGATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGCCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACTCGCGTCAAGGTTGTCAAGAACAAGGTGGCTCCACCATTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATTGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAATCCTGATATTGCGGCGACCCTTGAGAAG
CAGATTCGCGACAAACTGCTGACCGCAGCGCCAGACGTCAAGGCTGCGGCCAACCGCGAACCTGTTGATGACATGGCAGA
AGCTGACGCTGATAGCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	87.714	99.432	0.872
recA	Acinetobacter baylyi ADP1	73.926	99.148	0.733
recA	Acinetobacter baumannii D1279779	73.178	97.443	0.713
recA	Vibrio cholerae O1 biovar El Tor strain E7946	75	93.182	0.699
recA	Vibrio cholerae strain A1552	75	93.182	0.699
recA	Glaesserella parasuis strain SC1401	69.591	97.159	0.676
recA	Ralstonia pseudosolanacearum GMI1000	70.149	95.17	0.668
recA	Neisseria gonorrhoeae MS11	72.222	92.045	0.665
recA	Neisseria gonorrhoeae MS11	72.222	92.045	0.665
recA	Neisseria gonorrhoeae strain FA1090	72.222	92.045	0.665
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.526	92.898	0.599
recA	Helicobacter pylori strain NCTC11637	59.259	99.716	0.591
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.677	94.886	0.585
recA	Helicobacter pylori 26695	58.689	99.716	0.585
recA	Bacillus subtilis subsp. subtilis str. 168	61.682	91.193	0.562
recA	Streptococcus mutans UA159	59.692	92.33	0.551
recA	Streptococcus pyogenes NZ131	57.927	93.182	0.54
recA	Streptococcus pneumoniae TIGR4	58.104	92.898	0.54
recA	Streptococcus pneumoniae D39	58.104	92.898	0.54
recA	Streptococcus pneumoniae R6	58.104	92.898	0.54
recA	Streptococcus pneumoniae Rx1	58.104	92.898	0.54
recA	Streptococcus mitis SK321	58.333	92.045	0.537
recA	Streptococcus mitis NCTC 12261	58.333	92.045	0.537
recA	Latilactobacillus sakei subsp. sakei 23K	58.567	91.193	0.534
recA	Lactococcus lactis subsp. cremoris KW2	57.276	91.761	0.526
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.269	92.898	0.523