Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CFF04554_RS01005 Genome accession   NZ_CP008808
Coordinates   183834..184871 (-) Length   345 a.a.
NCBI ID   WP_002848230.1    Uniprot ID   O30884
Organism   Campylobacter fetus subsp. fetus 04/554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 178834..189871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFF04554_RS00980 (CFF04554_0197) - 179977..180519 (+) 543 WP_038452701.1 NTP transferase domain-containing protein -
  CFF04554_RS00985 (CFF04554_0198) - 180516..181538 (+) 1023 WP_038452703.1 phospholipase A -
  CFF04554_RS00990 (CFF04554_0199) - 181579..182292 (-) 714 WP_187759210.1 AMIN domain-containing protein -
  CFF04554_RS00995 (CFF04554_0200) - 182309..182587 (-) 279 WP_002848222.1 hypothetical protein -
  CFF04554_RS01000 (CFF04554_0201) eno 182584..183834 (-) 1251 WP_038452708.1 phosphopyruvate hydratase -
  CFF04554_RS01005 (CFF04554_0202) recA 183834..184871 (-) 1038 WP_002848230.1 recombinase RecA Machinery gene
  CFF04554_RS01010 (CFF04554_0203) - 184972..185838 (+) 867 WP_038452711.1 menaquinone biosynthesis family protein -
  CFF04554_RS01015 (CFF04554_0204) fliQ 185838..186104 (+) 267 WP_002848233.1 flagellar biosynthesis protein FliQ -
  CFF04554_RS01020 (CFF04554_0205) - 186101..186862 (+) 762 WP_002848234.1 UDP-N-acetylmuramate dehydrogenase -
  CFF04554_RS01030 (CFF04554_0207) - 187177..187506 (+) 330 WP_010396050.1 hypothetical protein -
  CFF04554_RS01035 (CFF04554_0208) - 187511..187828 (+) 318 WP_002848236.1 hypothetical protein -
  CFF04554_RS01040 (CFF04554_0209) - 187885..188628 (+) 744 WP_002848237.1 phosphatidate cytidylyltransferase -
  CFF04554_RS01045 (CFF04554_0210) - 188625..189707 (+) 1083 WP_002848238.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37209.48 Da        Isoelectric Point: 4.8930

>NTDB_id=124372 CFF04554_RS01005 WP_002848230.1 183834..184871(-) (recA) [Campylobacter fetus subsp. fetus 04/554]
MDDNKKKSLDLALKQIDKAFGKGTVLRLGDKEIEPIDSISSGSIGLDIALGIGGVPKGRIVEIYGPESSGKTTLTLHLIA
ESQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIVIDSVAALTPKSEIEGDMGD
QHVGLQARLMSQALRKLTGVVHKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQSDEPIGN
RVKVKVVKNKVAPPFRQAEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYDNSKLGQGRENSKAFLKENKAIADEIT
EKIRANMGDSIMSGAVDEEEMEGDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=124372 CFF04554_RS01005 WP_002848230.1 183834..184871(-) (recA) [Campylobacter fetus subsp. fetus 04/554]
ATGGATGATAATAAGAAAAAAAGCCTAGACCTTGCTTTAAAGCAGATTGATAAAGCTTTTGGCAAAGGCACTGTTTTAAG
GCTAGGAGACAAGGAAATAGAGCCGATAGATTCTATCTCCTCAGGATCGATAGGACTTGATATAGCTCTTGGTATAGGCG
GCGTACCAAAAGGAAGAATAGTCGAAATTTATGGGCCAGAAAGCTCTGGTAAAACAACTCTTACTTTGCATTTAATAGCA
GAATCTCAAAAAGTCGGCGGAGTTTGCGCGTTTGTAGATGCAGAGCATGCACTTGATGTTAAATATGCTAAAAATTTAGG
CGTTGATACGGATAACTTATATATTTCTCAACCGGACTTCGGAGAGCAAGCTCTTGATATAGTAGAAACTCTAGCTAGAA
GCGGCGCCGTTGATCTTATAGTAATAGATAGCGTAGCAGCTTTAACACCAAAAAGCGAAATAGAAGGCGATATGGGAGAT
CAGCACGTAGGGCTGCAAGCAAGACTCATGAGTCAAGCACTTAGAAAATTAACCGGAGTTGTCCATAAAATGGGAACTAC
AGTTGTATTTATAAACCAAATTCGTATGAAAATCGGCGCTATGGGCTATGGCACTCCTGAAACTACTACTGGCGGAAATG
CGCTTAAATTTTACGCTTCAGTTAGACTTGACGTACGTAAAATAGCTACTTTAAAACAGAGCGATGAGCCAATCGGAAAC
CGCGTAAAAGTAAAAGTAGTAAAAAACAAAGTCGCTCCTCCTTTTAGACAAGCCGAATTTGATATCATGTTTGGAGAAGG
TATCAGCAAAGAAGGAGAGATAATAGATTACGGCGTAAAACTTGATATTATCGATAAAAGCGGCGCTTGGTTTAGCTATG
ATAATTCAAAATTAGGTCAAGGCAGAGAAAACTCAAAAGCGTTTTTAAAAGAAAATAAAGCAATAGCAGATGAAATAACA
GAAAAAATCCGTGCAAATATGGGTGATAGCATAATGAGCGGTGCAGTAGATGAAGAAGAAATGGAAGGAGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O30884

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

84.412

98.551

0.832
  recA Helicobacter pylori 26695

77.273

95.652

0.739
  recA Helicobacter pylori strain NCTC11637

76.97

95.652

0.736
  recA Neisseria gonorrhoeae MS11

64.368

100

0.649
  recA Neisseria gonorrhoeae strain FA1090

64.368

100

0.649
  recA Neisseria gonorrhoeae MS11

64.368

100

0.649
  recA Acinetobacter baylyi ADP1

62.717

100

0.629
  recA Glaesserella parasuis strain SC1401

62.319

100

0.623
  recA Acinetobacter baumannii D1279779

62.391

99.42

0.62
  recA Pseudomonas stutzeri DSM 10701

65.138

94.783

0.617
  recA Ralstonia pseudosolanacearum GMI1000

64.134

95.362

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

94.203

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

96.232

0.609
  recA Vibrio cholerae strain A1552

62.037

93.913

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.037

93.913

0.583
  recA Streptococcus mutans UA159

59.091

95.652

0.565
  recA Streptococcus pyogenes NZ131

59.091

95.652

0.565
  recA Lactococcus lactis subsp. cremoris KW2

59.451

95.072

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

58.841

95.072

0.559
  recA Streptococcus mitis NCTC 12261

58.537

95.072

0.557
  recA Streptococcus pneumoniae TIGR4

58.232

95.072

0.554
  recA Streptococcus pneumoniae R6

58.232

95.072

0.554
  recA Streptococcus pneumoniae Rx1

58.232

95.072

0.554
  recA Streptococcus pneumoniae D39

58.232

95.072

0.554
  recA Streptococcus mitis SK321

57.927

95.072

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.59

93.333

0.519

Multiple sequence alignment