Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HL41_RS06325 Genome accession   NZ_CP008796
Coordinates   1246549..1247607 (+) Length   352 a.a.
NCBI ID   WP_038062672.1    Uniprot ID   A0A3B8N326
Organism   Thermodesulfobacterium commune DSM 2178     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1241549..1252607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HL41_RS06305 (HL41_06565) - 1241701..1241979 (+) 279 Protein_1267 N-acyl homoserine lactonase family protein -
  HL41_RS06310 (HL41_06570) - 1241945..1243150 (-) 1206 WP_038549552.1 IS256 family transposase -
  HL41_RS06315 - 1243228..1243806 (+) 579 WP_235181288.1 N-acyl homoserine lactonase family protein -
  HL41_RS06320 (HL41_06580) - 1243834..1246428 (-) 2595 WP_081856536.1 calcium-translocating P-type ATPase, PMCA-type -
  HL41_RS06325 (HL41_06585) recA 1246549..1247607 (+) 1059 WP_038062672.1 recombinase RecA Machinery gene
  HL41_RS06330 rfaE1 1247622..1248626 (+) 1005 WP_051754547.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  HL41_RS06335 (HL41_06595) eno 1248637..1249917 (+) 1281 WP_038062675.1 phosphopyruvate hydratase -
  HL41_RS09115 - 1249925..1251229 (+) 1305 WP_158506232.1 TldD/PmbA family protein -
  HL41_RS06345 (HL41_06605) trpD 1251231..1252268 (+) 1038 WP_038062677.1 anthranilate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38042.09 Da        Isoelectric Point: 8.2891

>NTDB_id=124272 HL41_RS06325 WP_038062672.1 1246549..1247607(+) (recA) [Thermodesulfobacterium commune DSM 2178]
MDVLEKKKAVEAAISQIEKMFGKGSIMRLGEGAKKIEVSVIPTGSLSLDIATGIGGIPRGRITEIYGAEASGKTTLALHM
VAEAQKQGGVAAFIDAEHALDLNYAQKLGVNIEDLLVSQPDTGEQALEIAEVLARSGAVDIIVIDSVAALVPKAEIEGEM
EDQQVGLQARLMSKAMRKLTSAISKSNTAVVFINQTRMKIGTFSYGGPPETTPGGMALKFFASLRLEIKKIASIKEGQEP
LGHRVKVKVVKNKLAPPFKEVEFDIYFGEGISKEAELVDLGVEMEVIEKSGSWFSYQGERLGQGKENVRKLLKENKQLAL
EIENKIREKAGLPLIKTPSEKSTEKPQKGKQG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=124272 HL41_RS06325 WP_038062672.1 1246549..1247607(+) (recA) [Thermodesulfobacterium commune DSM 2178]
ATGGATGTTTTAGAAAAGAAAAAAGCCGTAGAGGCTGCTATTTCTCAAATAGAAAAGATGTTTGGTAAAGGTTCTATCAT
GAGACTCGGAGAGGGGGCTAAAAAAATAGAAGTTTCTGTAATTCCTACCGGGTCCCTCAGTCTTGATATTGCTACAGGTA
TAGGAGGCATCCCCAGAGGAAGGATAACAGAGATCTACGGGGCTGAGGCTTCAGGTAAAACTACCTTAGCCCTTCACATG
GTAGCTGAGGCTCAAAAACAGGGGGGAGTAGCTGCTTTTATCGACGCTGAGCATGCCTTAGACCTAAACTACGCCCAAAA
ATTAGGAGTTAACATCGAAGACCTTCTTGTGTCCCAACCAGACACAGGAGAGCAAGCCTTAGAGATAGCAGAGGTATTAG
CAAGAAGTGGGGCGGTAGATATCATAGTGATAGACTCAGTTGCAGCCCTTGTACCTAAGGCTGAGATAGAAGGCGAAATG
GAGGACCAACAAGTGGGGCTGCAGGCTCGTCTTATGTCTAAAGCCATGAGAAAACTTACCTCTGCCATCTCTAAAAGCAA
CACCGCTGTAGTTTTTATTAACCAAACTAGAATGAAGATAGGGACTTTCAGCTACGGAGGTCCCCCAGAAACCACCCCTG
GAGGTATGGCCCTTAAGTTTTTTGCTTCGTTAAGACTTGAGATAAAGAAAATCGCCTCCATAAAAGAAGGACAAGAACCA
TTAGGACACAGGGTAAAAGTAAAAGTGGTAAAAAACAAATTGGCCCCTCCTTTTAAAGAGGTGGAATTTGACATCTATTT
TGGAGAAGGTATCTCTAAGGAGGCTGAGCTGGTTGACCTTGGGGTAGAGATGGAAGTAATCGAAAAAAGCGGTTCCTGGT
TCTCTTATCAGGGAGAAAGACTTGGGCAAGGCAAAGAAAACGTAAGAAAACTACTTAAAGAAAACAAACAACTTGCCTTA
GAGATAGAAAATAAAATAAGAGAAAAAGCAGGATTGCCTCTAATTAAAACCCCCTCTGAAAAATCTACCGAGAAACCTCA
AAAGGGAAAACAAGGATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B8N326

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

64.024

93.182

0.597
  recA Helicobacter pylori 26695

61.224

97.443

0.597
  recA Helicobacter pylori strain NCTC11637

60.933

97.443

0.594
  recA Ralstonia pseudosolanacearum GMI1000

65.823

89.773

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.607

95.455

0.588
  recA Neisseria gonorrhoeae strain FA1090

59.078

98.58

0.582
  recA Neisseria gonorrhoeae MS11

59.078

98.58

0.582
  recA Neisseria gonorrhoeae MS11

59.078

98.58

0.582
  recA Acinetobacter baumannii D1279779

61.42

92.045

0.565
  recA Vibrio cholerae strain A1552

61.61

91.761

0.565
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

91.761

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

93.75

0.565
  recA Pseudomonas stutzeri DSM 10701

58.407

96.307

0.562
  recA Acinetobacter baylyi ADP1

61.111

92.045

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

57.434

97.443

0.56
  recA Glaesserella parasuis strain SC1401

60.681

91.761

0.557
  recA Lactococcus lactis subsp. cremoris KW2

58.735

94.318

0.554
  recA Streptococcus pneumoniae TIGR4

56.686

97.727

0.554
  recA Streptococcus pneumoniae Rx1

56.686

97.727

0.554
  recA Streptococcus pneumoniae D39

56.686

97.727

0.554
  recA Streptococcus pneumoniae R6

56.686

97.727

0.554
  recA Streptococcus mutans UA159

55.271

99.716

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

92.614

0.545
  recA Streptococcus pyogenes NZ131

57.402

94.034

0.54
  recA Streptococcus mitis SK321

57.229

94.318

0.54
  recA Streptococcus mitis NCTC 12261

57.229

94.318

0.54

Multiple sequence alignment