Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   BSSP1_RS02340 Genome accession   NZ_CP007695
Coordinates   481199..482284 (+) Length   361 a.a.
NCBI ID   WP_006070944.1    Uniprot ID   B0CH00
Organism   Brucella suis bv.     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 476199..487284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSSP1_RS02320 (BSSP1_I0492) - 476527..477951 (+) 1425 WP_004685697.1 DegQ family serine endoprotease -
  BSSP1_RS02325 (BSSP1_I0493) - 478098..479411 (+) 1314 WP_004685696.1 replication-associated recombination protein A -
  BSSP1_RS02330 (BSSP1_I0494) - 479535..480119 (+) 585 WP_004683914.1 transglycosylase SLT domain-containing protein -
  BSSP1_RS02335 (BSSP1_I0495) - 480206..480868 (+) 663 WP_004686962.1 OmpA family protein -
  BSSP1_RS02340 (BSSP1_I0497) recA 481199..482284 (+) 1086 WP_006070944.1 recombinase RecA Machinery gene
  BSSP1_RS02345 (BSSP1_I0498) alaS 482677..485334 (+) 2658 WP_002964330.1 alanine--tRNA ligase -
  BSSP1_RS02350 (BSSP1_I0499) phoA 485486..486931 (-) 1446 WP_002967731.1 alkaline phosphatase -

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 38767.20 Da        Isoelectric Point: 4.8780

>NTDB_id=122757 BSSP1_RS02340 WP_006070944.1 481199..482284(+) (recA) [Brucella suis bv.]
MSQNSLRLVEDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPES
SGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
SIKERDEVMGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYL
KDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAEM

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=122757 BSSP1_RS02340 WP_006070944.1 481199..482284(+) (recA) [Brucella suis bv.]
ATGTCTCAAAATTCATTGCGACTTGTTGAGGATAATTCAGTGGACAAGACAAAAGCTCTCGACGCGGCATTGTCGCAAAT
CGAACGGGCGTTCGGCAAAGGCTCAATCATGCGTCTGGGCCAGAACGATCAGGTGGTCGAAATCGAAACCGTATCGACCG
GCTCGCTCTCGCTCGATATTGCCTTGGGGGTTGGCGGCTTGCCCAAGGGACGTATCGTGGAAATCTATGGGCCGGAAAGT
TCCGGTAAAACCACGCTTGCCTTGCACACCATCGCTGAAGCGCAGAAGAAGGGCGGCATCTGCGCATTCGTCGATGCGGA
ACATGCGCTTGACCCGGTCTATGCGCGCAAGCTCGGTGTCGATCTTGAAAATCTTCTGATCTCGCAGCCCGATACGGGTG
AACAGGCGCTTGAAATCACCGATACGCTCGTGCGCTCCGGCGCCATCGACGTTCTCGTTGTCGACTCGGTCGCAGCCCTG
ACGCCGCGTGCTGAAATCGAAGGTGAAATGGGGGATTCCCTGCCGGGCCTTCAGGCCCGTCTCATGAGCCAGGCGCTGCG
CAAGCTTACTGGCTCCATTTCCCGTTCAAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTCATGT
TCGGCTCGCCGGAAACGACAACGGGCGGCAATGCGCTCAAGTTCTATGCTTCGGTTCGCCTCGATATTCGCCGTATCGGC
TCCATCAAGGAGCGCGACGAAGTGATGGGCAACCAGACCCGCGTGAAGGTGGTGAAGAACAAGCTCGCTCCTCCGTTCAA
GCAGGTCGAATTCGATATCATGTATGGCGCGGGCGTTTCCAAGGTGGGCGAGCTGGTCGATCTTGGTGTCAAGGCCGGTG
TGGTTGAGAAGTCTGGTGCCTGGTTCTCCTATAATTCCCAGCGTCTCGGGCAGGGGCGCGAGAACGCCAAGCAATATCTC
AAGGATAATCCGGAAGTCGCGCGTGAAATCGAAACCACGCTTCGCCAGAATGCCGGCCTGATCGCCGAGCAGTTCCTTGA
CGATGGCGGACCGGAAGAAGATGCTGCCGGCGCGGCGGAAATGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB B0CH00

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.746

92.798

0.657

  recA Vibrio cholerae strain A1552

70.746

92.798

0.657

  recA Acinetobacter baylyi ADP1

72.36

89.197

0.645

  recA Neisseria gonorrhoeae strain FA1090

68.035

94.46

0.643

  recA Neisseria gonorrhoeae MS11

68.035

94.46

0.643

  recA Neisseria gonorrhoeae MS11

68.035

94.46

0.643

  recA Ralstonia pseudosolanacearum GMI1000

73.567

86.981

0.64

  recA Glaesserella parasuis strain SC1401

67.347

95.014

0.64

  recA Acinetobacter baumannii D1279779

71.739

89.197

0.64

  recA Pseudomonas stutzeri DSM 10701

71.028

88.92

0.632

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.361

90.582

0.601

  recA Bacillus subtilis subsp. subtilis str. 168

65.644

90.305

0.593

  recA Helicobacter pylori 26695

65.644

90.305

0.593

  recA Helicobacter pylori strain NCTC11637

65.337

90.305

0.59

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

90.582

0.587

  recA Latilactobacillus sakei subsp. sakei 23K

62.883

90.305

0.568

  recA Streptococcus mitis SK321

60.725

91.69

0.557

  recA Streptococcus mitis NCTC 12261

60.423

91.69

0.554

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

88.643

0.554

  recA Streptococcus mutans UA159

59.459

92.244

0.548

  recA Streptococcus pneumoniae Rx1

59.517

91.69

0.546

  recA Streptococcus pneumoniae D39

59.517

91.69

0.546

  recA Streptococcus pneumoniae TIGR4

59.517

91.69

0.546

  recA Streptococcus pneumoniae R6

59.517

91.69

0.546

  recA Streptococcus pyogenes NZ131

59.878

91.136

0.546

  recA Lactococcus lactis subsp. cremoris KW2

59.215

91.69

0.543


Multiple sequence alignment