Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EG66_RS02485 Genome accession   NZ_CP007605
Coordinates   482586..483629 (+) Length   347 a.a.
NCBI ID   WP_023591820.1    Uniprot ID   V5NLD9
Organism   Helicobacter pylori strain BM012B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 477586..488629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG66_RS02450 (EG66_02595) - 478177..478395 (+) 219 WP_001860815.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  EG66_RS02455 (EG66_02600) ccoP 478397..479275 (+) 879 WP_023591815.1 cytochrome-c oxidase, cbb3-type subunit III -
  EG66_RS02460 (EG66_02605) - 479286..479492 (+) 207 WP_000670506.1 DUF4006 family protein -
  EG66_RS02465 (EG66_02615) - 479593..480177 (+) 585 WP_023591816.1 hypothetical protein -
  EG66_RS02470 (EG66_02620) - 480189..480779 (+) 591 WP_023591817.1 hypothetical protein -
  EG66_RS02475 (EG66_02625) - 480860..481627 (+) 768 WP_038419754.1 hypothetical protein -
  EG66_RS02480 (EG66_02630) - 481624..482487 (-) 864 WP_023591819.1 menaquinone biosynthesis family protein -
  EG66_RS02485 (EG66_02635) recA 482586..483629 (+) 1044 WP_023591820.1 recombinase RecA Machinery gene
  EG66_RS02490 (EG66_02640) eno 483641..484921 (+) 1281 WP_023591821.1 phosphopyruvate hydratase -
  EG66_RS02495 (EG66_02645) - 484914..485189 (+) 276 WP_000146222.1 hypothetical protein -
  EG66_RS02500 (EG66_02650) - 485207..485803 (+) 597 WP_001879414.1 AMIN domain-containing protein -
  EG66_RS02505 (EG66_02655) - 485808..486296 (+) 489 WP_023591822.1 shikimate kinase -
  EG66_RS02510 (EG66_02660) - 486318..487274 (+) 957 WP_023526656.1 PDC sensor domain-containing protein -
  EG66_RS02515 (EG66_02665) rfaJ 487271..488389 (-) 1119 WP_023591823.1 HP0159 family lipopolysaccharide 1,6-glucosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37688.41 Da        Isoelectric Point: 5.5047

>NTDB_id=121591 EG66_RS02485 WP_023591820.1 482586..483629(+) (recA) [Helicobacter pylori strain BM012B]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWFSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=121591 EG66_RS02485 WP_023591820.1 482586..483629(+) (recA) [Helicobacter pylori strain BM012B]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCATTCATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTGGTGGTGGTGGATTCGGTGGCGGCCCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACCACTTTAATCTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCTAAAGTGGTTAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGTTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCTCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGATCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5NLD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.712

100

0.997
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

79.268

94.524

0.749
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.769

93.66

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.759

95.677

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

60.234

98.559

0.594
  recA Glaesserella parasuis strain SC1401

60.976

94.524

0.576
  recA Streptococcus pneumoniae Rx1

56.125

100

0.568
  recA Streptococcus pneumoniae D39

56.125

100

0.568
  recA Streptococcus pneumoniae R6

56.125

100

0.568
  recA Streptococcus pneumoniae TIGR4

56.125

100

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.359

94.813

0.553
  recA Streptococcus pyogenes NZ131

58.182

95.101

0.553
  recA Streptococcus mitis NCTC 12261

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment