Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WS08_RS04230 Genome accession   NZ_CP007588
Coordinates   872230..873369 (-) Length   379 a.a.
NCBI ID   WP_009496375.1    Uniprot ID   A0A075TZJ3
Organism   Weissella tructae strain WS08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 867230..878369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS08_RS04215 (WS08_0788) - 867679..868464 (-) 786 WP_009496378.1 hypothetical protein -
  WS08_RS04220 (WS08_0789) coaA 868856..869803 (-) 948 WP_009496377.1 type I pantothenate kinase -
  WS08_RS04225 (WS08_0790) helD 869806..872091 (-) 2286 WP_009496376.1 RNA polymerase recycling motor HelD -
  WS08_RS04230 (WS08_0791) recA 872230..873369 (-) 1140 WP_009496375.1 recombinase RecA Machinery gene
  WS08_RS04235 (WS08_0792) - 873447..873920 (-) 474 WP_009496374.1 nicotinamide-nucleotide amidohydrolase family protein -
  WS08_RS04240 (WS08_0793) pgsA 873987..874571 (-) 585 WP_009496373.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WS08_RS04245 (WS08_0794) - 874585..875487 (-) 903 WP_009496372.1 helix-turn-helix domain-containing protein -
  WS08_RS04250 (WS08_0795) yfmH 875558..876829 (-) 1272 WP_009496371.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  WS08_RS04255 (WS08_0796) yfmF 876807..878084 (-) 1278 WP_009496370.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40843.32 Da        Isoelectric Point: 4.8318

>NTDB_id=121381 WS08_RS04230 WP_009496375.1 872230..873369(-) (recA) [Weissella tructae strain WS08]
MASGKNINPNKKIEGRIEDKAAREKALNDALKKIEKSFGKGSVMKMGDSKFTHVESTSTGSLKLDIALGIGGYPKGRIIE
IYGPESSGKTTLALHAVAEAQKNGGIVAYIDAENAIDVAYARALGVNVDELLLSQPDTGEQGLAIADELISSGAIDMVVV
DSVAALTPKAEIDGEIGDSSVGLQARMMSQALRKMSGGILRTGTTAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRL
DVRRRGSIEPTKADGDDVKSVGNLTKIKVAKNKVAAPFREIEIEIMFGKGISKTGEMIDLAVDKDIVNKSGSWFAYEGNK
IGQGKVNAIRWLEDPEQKETYDEIYNRVRDAYLGNKDGAEEEVVEQNEEIDLIDIDSAE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=121381 WS08_RS04230 WP_009496375.1 872230..873369(-) (recA) [Weissella tructae strain WS08]
ATGGCATCAGGGAAGAATATTAATCCAAATAAAAAGATTGAAGGACGTATCGAAGACAAAGCGGCTCGTGAAAAGGCTTT
GAATGATGCGCTAAAGAAGATTGAAAAGTCTTTTGGTAAGGGATCTGTTATGAAGATGGGAGACAGTAAGTTTACCCATG
TTGAATCTACATCAACAGGTTCATTGAAGTTGGATATCGCATTGGGAATTGGTGGATATCCTAAGGGACGTATCATTGAA
ATTTACGGTCCTGAATCATCAGGTAAGACAACATTGGCTTTGCACGCTGTTGCGGAAGCACAAAAGAACGGTGGAATCGT
TGCATATATTGACGCGGAAAACGCGATTGATGTTGCCTATGCTCGTGCCTTAGGTGTTAACGTTGATGAACTATTGTTGT
CACAACCAGACACTGGGGAACAAGGATTGGCGATTGCTGATGAATTGATTTCTTCTGGAGCAATTGACATGGTTGTTGTG
GACTCTGTTGCGGCTTTGACACCAAAGGCGGAAATCGATGGAGAAATCGGAGATTCTTCTGTTGGATTGCAAGCACGTAT
GATGTCACAAGCGCTTCGTAAGATGTCTGGTGGTATTTTGCGTACCGGGACAACGGCAATCTTTATTAACCAATTGCGTG
AAAAGATTGGTGTGATGTTTGGTAACCCTGAAACAACACCAGGTGGACGTGCGTTGAAGTTCTATTCATCAGTTCGTTTG
GATGTTCGTCGTCGTGGAAGCATTGAACCAACTAAGGCTGACGGGGATGATGTGAAGTCAGTTGGTAACTTGACAAAGAT
TAAGGTTGCTAAGAACAAGGTGGCTGCACCGTTCCGTGAAATCGAAATTGAAATCATGTTTGGTAAGGGTATTTCTAAGA
CAGGTGAAATGATTGATTTGGCTGTTGATAAGGATATTGTTAACAAATCTGGATCATGGTTTGCCTATGAAGGTAACAAG
ATTGGTCAAGGAAAAGTGAATGCAATTCGTTGGCTAGAAGATCCTGAACAAAAAGAAACATATGATGAAATTTACAACCG
TGTTCGTGATGCCTACTTGGGTAACAAGGACGGGGCTGAAGAAGAAGTTGTCGAACAAAATGAAGAAATTGATTTGATTG
ACATTGATAGTGCTGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075TZJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

67.143

92.348

0.62
  recA Streptococcus pneumoniae D39

67.143

92.348

0.62
  recA Streptococcus pneumoniae R6

67.143

92.348

0.62
  recA Streptococcus pneumoniae TIGR4

67.143

92.348

0.62
  recA Streptococcus mitis NCTC 12261

66.189

92.084

0.609
  recA Streptococcus mitis SK321

65.254

93.404

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

63.435

95.251

0.604
  recA Streptococcus mutans UA159

62.228

97.098

0.604
  recA Streptococcus pyogenes NZ131

66.087

91.029

0.602
  recA Lactococcus lactis subsp. cremoris KW2

66.867

87.599

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

63.939

87.071

0.557
  recA Acinetobacter baumannii D1279779

59.659

92.876

0.554
  recA Acinetobacter baylyi ADP1

59.091

92.876

0.549
  recA Neisseria gonorrhoeae MS11

63.522

83.905

0.533
  recA Neisseria gonorrhoeae strain FA1090

63.522

83.905

0.533
  recA Neisseria gonorrhoeae MS11

63.522

83.905

0.533
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.386

92.876

0.533
  recA Glaesserella parasuis strain SC1401

56.303

94.195

0.53
  recA Pseudomonas stutzeri DSM 10701

60.423

87.335

0.528
  recA Vibrio cholerae strain A1552

60.241

87.599

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.241

87.599

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.06

87.863

0.528
  recA Ralstonia pseudosolanacearum GMI1000

61.994

84.697

0.525
  recA Helicobacter pylori 26695

56.897

91.821

0.522
  recA Helicobacter pylori strain NCTC11637

56.322

91.821

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.364

87.071

0.491

Multiple sequence alignment