Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RRADSPS_RS07170 Genome accession   NZ_CP007514
Coordinates   1502743..1503786 (+) Length   347 a.a.
NCBI ID   WP_038681667.1    Uniprot ID   A0A023X3E9
Organism   Rubrobacter radiotolerans strain RSPS-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1497743..1508786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRADSPS_RS07155 (RradSPS_1425) - 1497754..1499415 (+) 1662 WP_038681665.1 ribonuclease J -
  RRADSPS_RS16230 (RradSPS_1426) - 1499654..1501939 (+) 2286 WP_051589507.1 DNA translocase FtsK -
  RRADSPS_RS16235 (RradSPS_1427) - 1502013..1502645 (+) 633 WP_051589508.1 helix-turn-helix domain-containing protein -
  RRADSPS_RS07170 (RradSPS_1428) recA 1502743..1503786 (+) 1044 WP_038681667.1 recombinase RecA Machinery gene
  RRADSPS_RS16240 (RradSPS_1429) - 1503867..1504502 (+) 636 WP_143533924.1 regulatory protein RecX -
  RRADSPS_RS07180 (RradSPS_1430) rny 1504681..1506225 (+) 1545 WP_038681669.1 ribonuclease Y -
  RRADSPS_RS07185 (RradSPS_1431) - 1506234..1506533 (+) 300 WP_038681671.1 hypothetical protein -
  RRADSPS_RS16245 (RradSPS_1432) - 1506530..1507483 (+) 954 WP_051589510.1 ATP-binding protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37291.32 Da        Isoelectric Point: 4.9021

>NTDB_id=120244 RRADSPS_RS07170 WP_038681667.1 1502743..1503786(+) (recA) [Rubrobacter radiotolerans strain RSPS-4]
MDRHKAIDAAFSQIEKKFGKGAIMRMGEREAQRIPAISTGALALDLALGIGGVPRGRIVEIYGPESSGKTTLALHVIAEA
QKAGGVAAFIDAEHALDPTYAEAIGVDLDELYFSQPDNGEQALEIADTLVRSGALDVVVVDSVAALVPRAEIEGEIGDSH
VGLQARLMSQALRKLSGSLSRSQTTAIFINQLREKIGVMFGSPETTPGGRALKFYSSVRLDVRRIGALKAGNETVGNQTK
VTVRKNKVAPPFKVVEFDIMYGEGISREGSLLDVGIEHGVIQKSGAWFAYGDERIGQGRENARKFLKENPEVTDRIVSEV
YGKLGLEPALDDEVPEEEPAEQPQTLA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=120244 RRADSPS_RS07170 WP_038681667.1 1502743..1503786(+) (recA) [Rubrobacter radiotolerans strain RSPS-4]
TTGGACAGGCACAAGGCCATAGACGCCGCGTTCTCGCAGATCGAGAAGAAGTTTGGCAAGGGTGCGATCATGCGCATGGG
CGAGCGAGAGGCGCAGCGGATACCGGCGATCTCGACCGGCGCTCTGGCCCTCGACCTCGCCCTCGGCATCGGCGGCGTGC
CCCGGGGCAGGATCGTCGAGATCTACGGCCCCGAGTCGAGCGGGAAGACGACCCTCGCCCTGCACGTTATCGCCGAAGCG
CAGAAGGCGGGAGGCGTTGCGGCCTTCATAGACGCCGAGCACGCCCTCGACCCGACCTACGCCGAGGCGATCGGCGTCGA
CCTGGACGAACTCTACTTCTCTCAGCCGGATAACGGCGAACAGGCCCTGGAGATTGCCGATACCCTCGTCAGAAGCGGCG
CCCTCGACGTCGTCGTCGTGGACTCCGTCGCTGCCCTCGTGCCTAGAGCTGAGATAGAGGGTGAGATAGGTGACTCTCAC
GTAGGGCTTCAGGCTCGGCTTATGAGCCAGGCTTTGAGGAAGCTCTCTGGGTCGTTGAGCCGCTCGCAGACGACGGCGAT
CTTCATCAACCAGCTCCGGGAGAAGATCGGGGTGATGTTCGGTTCTCCGGAGACGACGCCGGGTGGACGGGCGCTGAAGT
TCTACTCCAGCGTGCGTCTTGACGTGCGGCGGATCGGGGCGCTCAAGGCCGGGAACGAGACGGTCGGAAACCAGACGAAG
GTCACGGTCAGGAAGAACAAGGTCGCTCCGCCGTTCAAGGTCGTTGAGTTCGACATCATGTACGGGGAGGGGATCTCGCG
CGAGGGGAGCCTCCTGGACGTCGGCATCGAGCACGGTGTGATCCAGAAGAGCGGCGCGTGGTTTGCCTACGGGGACGAGA
GGATCGGCCAGGGCCGCGAGAACGCCCGGAAGTTCCTCAAGGAGAACCCGGAGGTCACCGACAGGATAGTTTCCGAGGTC
TACGGCAAGCTCGGGCTCGAGCCGGCGCTCGACGACGAGGTGCCCGAGGAGGAGCCCGCAGAGCAGCCTCAGACGCTCGC
GTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A023X3E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

93.948

0.637
  recA Streptococcus mutans UA159

62.931

100

0.631
  recA Neisseria gonorrhoeae MS11

63.372

99.135

0.628
  recA Neisseria gonorrhoeae MS11

63.372

99.135

0.628
  recA Neisseria gonorrhoeae strain FA1090

63.372

99.135

0.628
  recA Lactococcus lactis subsp. cremoris KW2

64.478

96.542

0.622
  recA Streptococcus pneumoniae D39

64.742

94.813

0.614
  recA Streptococcus pneumoniae R6

64.742

94.813

0.614
  recA Streptococcus pneumoniae TIGR4

64.742

94.813

0.614
  recA Streptococcus pneumoniae Rx1

64.742

94.813

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

63.205

97.118

0.614
  recA Streptococcus mitis NCTC 12261

64.438

94.813

0.611
  recA Streptococcus mitis SK321

64.438

94.813

0.611
  recA Pseudomonas stutzeri DSM 10701

62.908

97.118

0.611
  recA Streptococcus pyogenes NZ131

64.634

94.524

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.634

94.524

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.611

97.118

0.608
  recA Glaesserella parasuis strain SC1401

64.417

93.948

0.605
  recA Acinetobacter baylyi ADP1

60.29

99.424

0.599
  recA Acinetobacter baumannii D1279779

60.704

98.271

0.597
  recA Helicobacter pylori strain NCTC11637

62.769

93.66

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.654

93.372

0.585
  recA Helicobacter pylori 26695

62.154

93.66

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

94.813

0.582
  recA Vibrio cholerae strain A1552

64.63

89.625

0.579
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.63

89.625

0.579

Multiple sequence alignment