Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DA70_RS20415 Genome accession   NZ_CP007506
Coordinates   4610438..4611499 (-) Length   353 a.a.
NCBI ID   WP_023594263.1    Uniprot ID   A0A378YMJ1
Organism   Pandoraea pnomenusa strain RB38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4605438..4616499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA70_RS20390 (DA70_19780) - 4605735..4606463 (-) 729 WP_023594268.1 TerC family protein -
  DA70_RS20395 (DA70_19775) sucD 4606666..4607547 (-) 882 WP_023594267.1 succinate--CoA ligase subunit alpha -
  DA70_RS20400 (DA70_19770) sucC 4607629..4608795 (-) 1167 WP_023594266.1 ADP-forming succinate--CoA ligase subunit beta -
  DA70_RS20405 (DA70_19765) - 4608792..4609478 (-) 687 WP_023594265.1 DUF2889 domain-containing protein -
  DA70_RS20410 (DA70_19760) recX 4609798..4610340 (-) 543 WP_023872300.1 recombination regulator RecX -
  DA70_RS20415 (DA70_19755) recA 4610438..4611499 (-) 1062 WP_023594263.1 recombinase RecA Machinery gene
  DA70_RS20420 (DA70_19750) - 4611702..4612391 (+) 690 WP_023594262.1 response regulator transcription factor -
  DA70_RS20425 (DA70_19745) - 4612546..4614189 (+) 1644 WP_025250272.1 sensor histidine kinase -
  DA70_RS20430 (DA70_19740) - 4614361..4616019 (+) 1659 WP_025250271.1 MFS transporter -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37568.93 Da        Isoelectric Point: 4.8895

>NTDB_id=120101 DA70_RS20415 WP_023594263.1 4610438..4611499(-) (recA) [Pandoraea pnomenusa strain RB38]
MEESKKGSANLSAEKGKALAAALAQIEKQFGKGSIMRLGDGEVEADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVVAEMQKIGGTCAFIDAEHALDVGYASKLGVSVPDLLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIIDLGVNAKIVEKAGAWYSYNGEKIGQGKDNAREFLR
ENPDIAHEIENKVRASLGVTAINETGEIEADEA

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=120101 DA70_RS20415 WP_023594263.1 4610438..4611499(-) (recA) [Pandoraea pnomenusa strain RB38]
ATGGAAGAAAGCAAGAAAGGGTCTGCCAATCTGTCGGCCGAGAAAGGCAAGGCGCTTGCCGCCGCCCTCGCGCAGATCGA
GAAGCAATTCGGCAAGGGCTCGATCATGCGTCTGGGCGACGGCGAGGTCGAAGCGGACATCCAGGTCGTCTCGACCGGCT
CGCTGGGGCTGGACATCGCGCTCGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAAATCTACGGCCCGGAATCGTCG
GGGAAAACCACGCTCACGCTGCAGGTCGTTGCCGAAATGCAGAAGATCGGCGGTACGTGCGCGTTCATCGACGCGGAGCA
CGCGCTCGACGTCGGCTACGCCAGCAAGCTGGGCGTCTCGGTGCCGGATCTGCTGATCTCGCAGCCGGACACGGGCGAGC
AGGCACTGGAGATCGCCGACGCCCTGGTGCGTTCGGGCTCCATCGACCTCATCATCATCGACTCGGTGGCGGCACTGGTG
CCCAAGGCCGAAATCGAAGGTGAAATGGGCGATTCGTTGCCGGGTCTGCAGGCGCGTCTGATGTCGCAGGCGCTGCGCAA
GCTGACCGGCACGATCAAGCGCACGAACTGCACGGTGATCTTCATCAACCAGATTCGCATGAAGATCGGTGTGATGTTCG
GCAACCCGGAAACGACCACGGGCGGTAACGCGCTGAAGTTCTACTCGTCGGTGCGTCTGGATATCCGCCGTATCGGTTCG
ATCAAGAAGGGTGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTCTCGCCGCCGTTCCGCGA
GGCAATTTTCGACATCCTCTACGGCCAGGGCATTTCGCGCGAAGGCGAGATCATCGATCTGGGCGTGAATGCAAAGATCG
TCGAAAAGGCCGGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGTCAGGGCAAGGACAACGCGCGCGAGTTCCTGCGC
GAGAATCCGGATATCGCCCATGAGATCGAGAACAAGGTCCGCGCATCGCTTGGCGTGACCGCGATCAACGAGACCGGCGA
GATCGAAGCAGACGAGGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378YMJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.593

100

0.858
  recA Neisseria gonorrhoeae strain FA1090

72.515

96.884

0.703
  recA Neisseria gonorrhoeae MS11

72.515

96.884

0.703
  recA Neisseria gonorrhoeae MS11

72.515

96.884

0.703
  recA Pseudomonas stutzeri DSM 10701

73.574

94.334

0.694
  recA Acinetobacter baumannii D1279779

71.053

96.884

0.688
  recA Acinetobacter baylyi ADP1

72.508

93.768

0.68
  recA Glaesserella parasuis strain SC1401

68.895

97.45

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.865

92.635

0.666
  recA Vibrio cholerae strain A1552

71.865

92.635

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.545

93.484

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

92.635

0.601
  recA Helicobacter pylori 26695

64.134

93.201

0.598
  recA Helicobacter pylori strain NCTC11637

63.83

93.201

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

93.201

0.592
  recA Streptococcus mitis NCTC 12261

59.714

99.15

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

62.84

93.768

0.589
  recA Streptococcus mitis SK321

59.312

98.867

0.586
  recA Streptococcus pneumoniae TIGR4

60.174

97.45

0.586
  recA Streptococcus pneumoniae Rx1

60.174

97.45

0.586
  recA Streptococcus pneumoniae D39

60.174

97.45

0.586
  recA Streptococcus pneumoniae R6

60.174

97.45

0.586
  recA Streptococcus mutans UA159

60.355

95.751

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.412

96.317

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.121

93.768

0.564
  recA Streptococcus pyogenes NZ131

60.182

93.201

0.561

Multiple sequence alignment