Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CL55_RS09145 Genome accession   NZ_CP007501
Coordinates   1780008..1781096 (-) Length   362 a.a.
NCBI ID   WP_046330807.1    Uniprot ID   -
Organism   Polynucleobacter duraquae strain MWH-MoK4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1775008..1786096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CL55_RS09115 (CL55_00018060) moaC 1775275..1775748 (+) 474 WP_046330801.1 cyclic pyranopterin monophosphate synthase MoaC -
  CL55_RS09120 (CL55_00018070) - 1775825..1776322 (-) 498 WP_046330802.1 pilin -
  CL55_RS09125 (CL55_00018080) - 1776448..1777146 (-) 699 WP_046330803.1 TerC family protein -
  CL55_RS09130 (CL55_00018090) sucD 1777228..1778121 (-) 894 WP_046330804.1 succinate--CoA ligase subunit alpha -
  CL55_RS09135 (CL55_00018100) sucC 1778136..1779305 (-) 1170 WP_046330805.1 ADP-forming succinate--CoA ligase subunit beta -
  CL55_RS09140 (CL55_00018110) recX 1779464..1780000 (-) 537 WP_046330806.1 recombination regulator RecX -
  CL55_RS09145 (CL55_00018120) recA 1780008..1781096 (-) 1089 WP_046330807.1 recombinase RecA Machinery gene
  CL55_RS09150 (CL55_00018130) - 1781213..1781746 (-) 534 WP_046330808.1 DUF2878 domain-containing protein -
  CL55_RS09155 (CL55_00018140) - 1781818..1783077 (-) 1260 WP_046330809.1 putative Na+/H+ antiporter -
  CL55_RS09160 (CL55_00018150) - 1783197..1785329 (-) 2133 WP_046330810.1 sodium:solute symporter family protein -
  CL55_RS09165 (CL55_00018160) - 1785332..1785595 (-) 264 WP_046330811.1 DUF4212 domain-containing protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38756.26 Da        Isoelectric Point: 4.9703

>NTDB_id=120038 CL55_RS09145 WP_046330807.1 1780008..1781096(-) (recA) [Polynucleobacter duraquae strain MWH-MoK4]
MALDDKRKSASSEFDGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEIHQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKIGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYAYNGDRIGQGKDN
VREFLKENPAIAQDIEAKIRAKLGVKTGTAIVSDVLSEEEEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=120038 CL55_RS09145 WP_046330807.1 1780008..1781096(-) (recA) [Polynucleobacter duraquae strain MWH-MoK4]
ATGGCCTTAGACGATAAAAGAAAATCAGCATCATCCGAATTTGACGGTATGAGTGGAGACAAGCAAAAAGCATTAACTGC
AGCTTTAGCACAAATTGAGAAACAATTTGGCAAGGGCTCAATCATGAGATTGGGCGATGCAGAAATCCATCAAGATATTC
AGGTAGTTTCTAGCGGCTCATTGGGCTTAGATATTGCACTTGGAGTGGGTGGTTTGGCGCGTGGGCGCGTCATTGAGATT
TACGGACCGGAATCTTCAGGTAAGACCACGCTGACTTTGCATGCGATTGCAGAAATGCAAAAGATTGGTGGAACTTGTGC
ATTCATTGATGCGGAACATGCTTTAGATGTTCAGTACGCTTCACGCTTAGGTGTGGATGTGAACAACCTGTTGATCTCGC
AGCCAGATACTGGCGAGCAAGCATTAGAAATTGCAGACGCTTTGGTGCGTTCAGGCTCTATCGATTTAATTGTGATTGAC
TCTGTAGCGGCCTTAGTTCCAAGGGCGGAGATTGAGGGTGATATGGGTGATTCATTGCCTGGCCTTCAAGCCCGTCTGAT
GAGTCAAGCTTTACGTAAATTGACTGGTGCAATCAAGCGTACTAATACAACAGTAATCTTTATTAACCAAATCCGTATGA
AAATTGGCGTGATGTTTGGTTCACCTGAAACTACAACCGGTGGTAATGCACTGAAGTTCTACGCCTCTATGCGTTTAGAT
ATTCGTCGTATCGGCAGTATCAAGAAGGGCGATGAAGTTGTTGGTAACGAGACTCGCGTTAAAGTGGTCAAGAACAAGGT
ATCTCCGCCATTCCGCGAGGCAATCTTTGACATCATGTACGGCGCTGGAATTTCTCGAGAAGGTGAAATTATCGATATGG
GTGTTGAGGCTGATATCGTTGAAAAGTCAGGCTCTTGGTATGCTTATAACGGTGATCGTATTGGTCAAGGTAAAGACAAT
GTGCGTGAGTTCTTGAAAGAGAATCCAGCCATTGCCCAAGATATTGAGGCCAAGATTCGTGCGAAATTGGGAGTAAAGAC
TGGCACAGCTATAGTGAGCGACGTTCTGAGCGAAGAAGAGGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.109

99.171

0.785
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae MS11

73.636

91.16

0.671
  recA Neisseria gonorrhoeae strain FA1090

73.636

91.16

0.671
  recA Acinetobacter baumannii D1279779

69.767

95.028

0.663
  recA Acinetobacter baylyi ADP1

69.186

95.028

0.657
  recA Pseudomonas stutzeri DSM 10701

69.617

93.646

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.725

90.331

0.63
  recA Vibrio cholerae strain A1552

69.725

90.331

0.63
  recA Glaesserella parasuis strain SC1401

69.969

89.227

0.624
  recA Helicobacter pylori 26695

64.431

94.751

0.61
  recA Helicobacter pylori strain NCTC11637

64.14

94.751

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

90.055

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

94.475

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.653

91.436

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

90.055

0.564
  recA Streptococcus mutans UA159

58.551

95.304

0.558
  recA Streptococcus pneumoniae D39

60.119

92.818

0.558
  recA Streptococcus pneumoniae Rx1

60.119

92.818

0.558
  recA Streptococcus pneumoniae R6

60.119

92.818

0.558
  recA Streptococcus pneumoniae TIGR4

60.119

92.818

0.558
  recA Streptococcus mitis NCTC 12261

59.821

92.818

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

93.923

0.552
  recA Streptococcus mitis SK321

59.76

91.989

0.55
  recA Lactococcus lactis subsp. cremoris KW2

60

91.16

0.547
  recA Streptococcus pyogenes NZ131

59.574

90.884

0.541

Multiple sequence alignment