Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AH67_RS05915 Genome accession   NZ_CP007457
Coordinates   1360765..1361901 (-) Length   378 a.a.
NCBI ID   WP_039172103.1    Uniprot ID   A0A0A7I8F3
Organism   Bifidobacterium pseudolongum PV8-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355765..1366901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH67_RS05900 (AH67_06055) hpf 1358825..1359511 (-) 687 WP_022858748.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AH67_RS05910 (AH67_06060) - 1360063..1360749 (-) 687 WP_026648083.1 regulatory protein RecX -
  AH67_RS05915 (AH67_06065) recA 1360765..1361901 (-) 1137 WP_039172103.1 recombinase RecA Machinery gene
  AH67_RS05920 (AH67_06070) - 1362117..1362359 (-) 243 WP_026648082.1 DUF3046 domain-containing protein -
  AH67_RS05925 (AH67_06075) - 1362495..1363010 (-) 516 WP_026648081.1 helix-turn-helix domain-containing protein -
  AH67_RS05930 (AH67_06080) - 1363072..1363656 (-) 585 WP_052177288.1 CinA family protein -
  AH67_RS05935 (AH67_06085) pgsA 1363778..1364431 (-) 654 WP_022858743.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40435.87 Da        Isoelectric Point: 4.9924

>NTDB_id=119526 AH67_RS05915 WP_039172103.1 1360765..1361901(-) (recA) [Bifidobacterium pseudolongum PV8-2]
MATQTKADKTKAAAQDGEAPKIDPRRQAALDTALQQVEKSFGKGSAMRLGDRPEQDVEVIPTGSLALDMALGIGGLPRGR
VVEIYGPESSGKTTLALHVVANAQRNGGVAAFIDAEHALDPVYARNLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDV
IVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALAQANTTAIFINQLREKIGVFFGSPETTTGGKALKFYAS
VRMDIRRIQTLKNGEDAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISREGSVLDMALETGIVKKSGSWFTYEGDQLGQ
GRENVRKFLKDNLGVVDEIEHKVKVSYGLIAGEDEFAQGDTVEATIEGQPVEDAPKKN

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=119526 AH67_RS05915 WP_039172103.1 1360765..1361901(-) (recA) [Bifidobacterium pseudolongum PV8-2]
ATGGCTACGCAGACGAAGGCAGACAAAACCAAGGCGGCAGCGCAGGACGGCGAGGCACCGAAGATCGATCCACGCCGTCA
GGCGGCCCTTGACACCGCATTGCAACAGGTCGAGAAGAGCTTCGGCAAGGGGTCGGCCATGCGGTTGGGCGACCGGCCCG
AACAGGATGTGGAGGTCATTCCCACCGGTTCGCTGGCGCTCGACATGGCGTTGGGCATCGGGGGGCTGCCGCGTGGCCGC
GTGGTGGAGATCTACGGCCCGGAATCCTCGGGCAAGACGACCCTCGCGCTCCATGTGGTGGCCAACGCGCAGCGCAATGG
CGGCGTCGCGGCGTTCATCGACGCCGAGCACGCGCTCGACCCGGTGTATGCGCGCAATCTCGGCGTCGATACGGATTCAC
TGATCGTCTCGCAGCCGGACAACGGCGAGCAGGCGCTTGAGATCGCCGACATGCTCATCCGCTCCGGTGCGCTCGACGTG
ATCGTCATCGACTCCGTGGCGGCGCTCGTGCCGAAGGCCGAGATCGAAGGCGACATGGGTGACAGTCACGTGGGTCTGCA
GGCGCGTCTGATGAGCCAGGCGCTGCGCAAGATGACCGGCGCGCTCGCGCAGGCGAACACGACCGCGATCTTCATCAATC
AGCTGCGCGAGAAGATCGGCGTCTTCTTCGGCAGTCCCGAGACCACCACCGGCGGCAAGGCGCTCAAGTTCTATGCCTCG
GTGCGTATGGACATCCGCCGCATCCAGACGCTCAAGAACGGTGAGGACGCCGTGGGCAACCGCACCAAGGTCAAGGTGGT
GAAGAACAAGATGGCGCCACCGTTCAAGACCGCAGAGTTCGATGTGCTGTATGGCGAGGGCATCTCGCGTGAAGGCTCCG
TGCTCGACATGGCGCTTGAGACCGGCATCGTCAAGAAGTCGGGGTCGTGGTTCACCTACGAAGGCGACCAGTTGGGGCAG
GGGCGTGAGAATGTGCGCAAGTTCCTCAAAGACAACCTGGGCGTGGTCGATGAGATCGAGCACAAGGTCAAAGTCTCGTA
CGGCCTGATTGCCGGCGAAGACGAATTCGCGCAGGGCGACACGGTCGAGGCCACAATCGAGGGGCAGCCGGTGGAAGACG
CCCCCAAGAAGAACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(29-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7I8F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

60.282

93.915

0.566
  recA Streptococcus mitis SK321

60.282

93.915

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

66.049

85.714

0.566
  recA Acinetobacter baylyi ADP1

61.988

90.476

0.561
  recA Streptococcus pneumoniae TIGR4

58.127

96.032

0.558
  recA Streptococcus pneumoniae R6

58.127

96.032

0.558
  recA Streptococcus pneumoniae D39

58.127

96.032

0.558
  recA Streptococcus pneumoniae Rx1

58.127

96.032

0.558
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.222

87.037

0.55
  recA Glaesserella parasuis strain SC1401

61.357

89.683

0.55
  recA Acinetobacter baumannii D1279779

64.396

85.45

0.55
  recA Streptococcus mutans UA159

62.275

88.36

0.55
  recA Pseudomonas stutzeri DSM 10701

64.087

85.45

0.548
  recA Helicobacter pylori strain NCTC11637

63.11

86.772

0.548
  recA Helicobacter pylori 26695

63.11

86.772

0.548
  recA Ralstonia pseudosolanacearum GMI1000

66.134

82.804

0.548
  recA Neisseria gonorrhoeae strain FA1090

65.397

83.333

0.545
  recA Neisseria gonorrhoeae MS11

65.397

83.333

0.545
  recA Neisseria gonorrhoeae MS11

65.397

83.333

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

86.243

0.542
  recA Vibrio cholerae strain A1552

63.467

85.45

0.542
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.467

85.45

0.542
  recA Lactococcus lactis subsp. cremoris KW2

61.078

88.36

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

62.654

85.714

0.537
  recA Streptococcus pyogenes NZ131

60.843

87.831

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.403

88.624

0.526

Multiple sequence alignment