Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | AH68_RS06840 | Genome accession | NZ_CP007456 |
| Coordinates | 1547180..1548361 (-) | Length | 393 a.a. |
| NCBI ID | WP_039198821.1 | Uniprot ID | A0A0A7I3G9 |
| Organism | Bifidobacterium catenulatum PV20-2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1547567..1615820 | 1547180..1548361 | flank | -794 |
Gene organization within MGE regions
Location: 1547180..1615820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AH68_RS06840 (AH68_07070) | recA | 1547180..1548361 (-) | 1182 | WP_039198821.1 | recombinase RecA | Machinery gene |
| AH68_RS06845 (AH68_07075) | - | 1548615..1548848 (-) | 234 | WP_039199946.1 | DUF3046 domain-containing protein | - |
| AH68_RS06850 (AH68_07080) | - | 1548939..1549451 (-) | 513 | WP_039198824.1 | helix-turn-helix domain-containing protein | - |
| AH68_RS06855 (AH68_07085) | - | 1549512..1550078 (-) | 567 | WP_039198826.1 | CinA family protein | - |
| AH68_RS06860 (AH68_07090) | pgsA | 1550087..1550767 (-) | 681 | WP_039198828.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| AH68_RS06865 (AH68_07095) | - | 1550835..1553633 (-) | 2799 | WP_039199948.1 | DNA translocase FtsK | - |
| AH68_RS06870 (AH68_07100) | miaA | 1553831..1554877 (-) | 1047 | WP_039198830.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| AH68_RS06875 (AH68_07105) | miaB | 1554861..1556315 (-) | 1455 | WP_039198832.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| AH68_RS06880 (AH68_07110) | - | 1556447..1557175 (+) | 729 | WP_033500538.1 | GTP pyrophosphokinase family protein | - |
| AH68_RS06885 (AH68_07115) | - | 1557162..1558157 (-) | 996 | WP_039198835.1 | DMT family transporter | - |
| AH68_RS06890 (AH68_07120) | - | 1558276..1559109 (-) | 834 | WP_039198838.1 | Bax inhibitor-1/YccA family protein | - |
| AH68_RS10765 | - | 1559261..1559407 (+) | 147 | WP_158332986.1 | hypothetical protein | - |
| AH68_RS06895 (AH68_07130) | - | 1559471..1560133 (-) | 663 | WP_039198840.1 | response regulator transcription factor | - |
| AH68_RS06900 (AH68_07135) | - | 1560130..1561107 (-) | 978 | WP_236682379.1 | histidine kinase | - |
| AH68_RS11050 | - | 1561208..1561501 (+) | 294 | WP_236682380.1 | hypothetical protein | - |
| AH68_RS06905 (AH68_07145) | - | 1561688..1562686 (+) | 999 | WP_052189182.1 | ABC transporter ATP-binding protein | - |
| AH68_RS06910 (AH68_07150) | - | 1562717..1563961 (+) | 1245 | WP_039198845.1 | ABC transporter permease | - |
| AH68_RS06915 (AH68_07155) | - | 1563948..1565237 (+) | 1290 | WP_039198846.1 | ABC transporter permease | - |
| AH68_RS06920 (AH68_07160) | acnA | 1565586..1568288 (-) | 2703 | WP_039198848.1 | aconitate hydratase AcnA | - |
| AH68_RS06925 (AH68_07165) | - | 1568358..1570844 (-) | 2487 | WP_039198851.1 | HAD-IC family P-type ATPase | - |
| AH68_RS06930 (AH68_07170) | - | 1570981..1571562 (-) | 582 | WP_039198853.1 | sugar ABC transporter substrate-binding protein | - |
| AH68_RS06935 (AH68_07175) | - | 1571565..1572830 (-) | 1266 | WP_039198855.1 | class I SAM-dependent RNA methyltransferase | - |
| AH68_RS06940 (AH68_07180) | - | 1572830..1573576 (-) | 747 | WP_039198858.1 | DUF3159 domain-containing protein | - |
| AH68_RS06945 (AH68_07185) | - | 1573603..1574433 (-) | 831 | WP_039198860.1 | DUF3710 domain-containing protein | - |
| AH68_RS06950 (AH68_07190) | - | 1574551..1575411 (-) | 861 | WP_039198862.1 | exodeoxyribonuclease III | - |
| AH68_RS06955 (AH68_07195) | - | 1575485..1577494 (-) | 2010 | WP_039198864.1 | ABC transporter ATP-binding protein | - |
| AH68_RS06960 (AH68_07200) | - | 1577513..1578472 (-) | 960 | WP_039198866.1 | ABC transporter permease | - |
| AH68_RS06965 (AH68_07205) | - | 1578495..1579421 (-) | 927 | WP_039198868.1 | ABC transporter permease | - |
| AH68_RS06970 (AH68_07210) | - | 1579826..1581460 (-) | 1635 | WP_039199952.1 | ABC transporter substrate-binding protein | - |
| AH68_RS06975 (AH68_07215) | - | 1581762..1582688 (-) | 927 | WP_039198870.1 | tyrosine recombinase XerC | - |
| AH68_RS06980 (AH68_07220) | - | 1582866..1583123 (+) | 258 | WP_039198872.1 | DUF6725 family protein | - |
| AH68_RS06985 (AH68_07225) | - | 1583128..1584168 (-) | 1041 | WP_039198874.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| AH68_RS06990 (AH68_07230) | - | 1584162..1585142 (-) | 981 | WP_039198876.1 | prephenate dehydratase domain-containing protein | - |
| AH68_RS06995 (AH68_07235) | - | 1585209..1585775 (-) | 567 | WP_039198878.1 | hypothetical protein | - |
| AH68_RS07000 (AH68_07240) | typA | 1585981..1587912 (-) | 1932 | WP_004220539.1 | translational GTPase TypA | - |
| AH68_RS07005 (AH68_07245) | - | 1588050..1589330 (-) | 1281 | WP_039198883.1 | cysteine desulfurase family protein | - |
| AH68_RS07010 (AH68_07250) | nadC | 1589347..1590231 (-) | 885 | WP_039198885.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AH68_RS07015 (AH68_07255) | nadB | 1590268..1591992 (-) | 1725 | WP_039198887.1 | L-aspartate oxidase | - |
| AH68_RS07020 (AH68_07260) | nadA | 1591989..1593269 (-) | 1281 | WP_039198888.1 | quinolinate synthase NadA | - |
| AH68_RS07025 (AH68_07265) | - | 1593364..1594176 (-) | 813 | WP_039198890.1 | NrtR DNA-binding winged helix domain-containing protein | - |
| AH68_RS07030 (AH68_07270) | - | 1594341..1595180 (-) | 840 | WP_039198892.1 | ParA family protein | - |
| AH68_RS07035 (AH68_07275) | xerD | 1595268..1596224 (-) | 957 | WP_173405855.1 | site-specific tyrosine recombinase XerD | - |
| AH68_RS07040 (AH68_07280) | rplT | 1596372..1596755 (-) | 384 | WP_003834366.1 | 50S ribosomal protein L20 | - |
| AH68_RS07045 (AH68_07285) | rpmI | 1596806..1597000 (-) | 195 | WP_003834365.1 | 50S ribosomal protein L35 | - |
| AH68_RS07050 (AH68_07290) | infC | 1597019..1597717 (-) | 699 | WP_004220560.1 | translation initiation factor IF-3 | - |
| AH68_RS07055 (AH68_07295) | - | 1598032..1598787 (+) | 756 | WP_039198897.1 | thiamine diphosphokinase | - |
| AH68_RS07060 (AH68_07300) | gap | 1598935..1599990 (+) | 1056 | WP_003834362.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| AH68_RS07065 (AH68_07305) | ybaK | 1600120..1600626 (+) | 507 | WP_039198899.1 | Cys-tRNA(Pro) deacylase | - |
| AH68_RS07070 (AH68_07310) | - | 1600652..1601665 (-) | 1014 | WP_039198900.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| AH68_RS07075 (AH68_07315) | - | 1601827..1602777 (+) | 951 | WP_039198902.1 | aldose 1-epimerase family protein | - |
| AH68_RS11290 | - | 1602925..1602999 (+) | 75 | WP_003817083.1 | 50S ribosomal protein bL37 | - |
| AH68_RS07080 (AH68_07320) | - | 1603158..1603406 (-) | 249 | WP_039198904.1 | hypothetical protein | - |
| AH68_RS07085 (AH68_07325) | - | 1603403..1604044 (-) | 642 | WP_081995949.1 | sigma-70 family RNA polymerase sigma factor | - |
| AH68_RS07090 (AH68_07330) | - | 1604104..1605657 (+) | 1554 | WP_039198908.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| AH68_RS07095 (AH68_07335) | - | 1605719..1606720 (+) | 1002 | WP_039198909.1 | lipid II:glycine glycyltransferase FemX | - |
| AH68_RS07100 (AH68_07340) | - | 1606873..1608444 (-) | 1572 | WP_039199954.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| AH68_RS07105 (AH68_07345) | - | 1608627..1610228 (+) | 1602 | WP_039198911.1 | aminopeptidase P family protein | - |
| AH68_RS07110 (AH68_07350) | - | 1610230..1610751 (+) | 522 | WP_039198913.1 | NUDIX domain-containing protein | - |
| AH68_RS07115 (AH68_07355) | - | 1610855..1612564 (-) | 1710 | WP_039198916.1 | ABC transporter ATP-binding protein | - |
| AH68_RS07120 (AH68_07360) | - | 1612569..1613741 (-) | 1173 | WP_004220602.1 | ABC transporter permease | - |
| AH68_RS07125 (AH68_07365) | - | 1613743..1614834 (-) | 1092 | WP_039198918.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 393 a.a. Molecular weight: 41670.29 Da Isoelectric Point: 5.9228
>NTDB_id=119520 AH68_RS06840 WP_039198821.1 1547180..1548361(-) (recA) [Bifidobacterium catenulatum PV20-2]
MAQTSAAKGAAQNKSANGIDPRRQAALDTALAQVEKNFGKGSAMRLGDRPEQDVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKSGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRM
DIRRIQTIKNGDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYGGDQLGQGRE
NVRQFLKDNPELTEEIENKVKAEFGLIEPTDQFAEDGNDASAKDTKGEEKAKAVAKPETAKGATKSSKPADKA
MAQTSAAKGAAQNKSANGIDPRRQAALDTALAQVEKNFGKGSAMRLGDRPEQDVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKSGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRM
DIRRIQTIKNGDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYGGDQLGQGRE
NVRQFLKDNPELTEEIENKVKAEFGLIEPTDQFAEDGNDASAKDTKGEEKAKAVAKPETAKGATKSSKPADKA
Nucleotide
Download Length: 1182 bp
>NTDB_id=119520 AH68_RS06840 WP_039198821.1 1547180..1548361(-) (recA) [Bifidobacterium catenulatum PV20-2]
ATGGCACAGACGAGCGCGGCAAAGGGAGCCGCACAGAACAAGTCCGCGAACGGCATCGACCCGCGTCGTCAGGCCGCGCT
CGATACGGCGCTCGCGCAGGTCGAGAAGAATTTCGGCAAGGGGTCGGCCATGCGATTAGGCGATCGTCCCGAGCAGGATG
TCGAGGTGATTCCAACCGGATCACTGGCATTGGATATGGCATTGGGCATCGGCGGTTTGCCGAAGGGGCGTATTGTGGAG
ATCTACGGCCCGGAATCCTCTGGCAAGACCACGCTGGCGCTGCATGTGGTGGCCAATGCCCAGAAAAGCGGTGGAGTCGC
CGCGTTCATCGACGCGGAGCATGCGCTTGATCCTGTCTATGCGCGCAAGCTTGGCGTCGACACGGATTCGCTGATCGTCT
CTCAGCCCGATAACGGCGAACAGGCGCTGGAGATAGCGGATATGCTGATTCGTTCCGGCGCTCTTGACGTGATTGTCATC
GATTCCGTGGCGGCATTGGTGCCGAAGGCCGAAATCGAAGGTGAGATGGGCGACAGCCATGTCGGTTTGCAGGCGCGACT
GATGAGCCAGGCATTGCGTAAGATGACTGGCGCTTTGGCCCAGGCGGGCACCACGGCCATCTTCATCAACCAGCTTCGCG
AGAAGATCGGCGTGTTCTTCGGCAATCCGGAAACGACCACCGGTGGCAAGGCGTTGAAGTTCTACTCGTCCGTCCGCATG
GATATTCGTCGCATCCAGACCATCAAGAACGGCGACGAGGCTGTGGGCAACCGTACCAAGGTCAAGGTCGTCAAGAACAA
GATGGCTCCGCCGTTCAAGACTGCTGAGTTCGATGTGCTGTACGGCGAGGGGATTTCCAAAGAAGGATCTGTGCTTGACA
TGGCGTTGCAGGTCAATGTCGTGAAGAAGTCCGGATCGTGGTTCACGTATGGTGGCGACCAACTGGGGCAGGGGCGTGAG
AACGTGCGTCAGTTCCTCAAAGACAACCCGGAGCTCACTGAAGAGATCGAGAATAAGGTGAAAGCCGAATTCGGACTCAT
TGAGCCTACCGACCAATTCGCCGAGGATGGTAACGATGCGTCGGCGAAGGATACGAAAGGCGAGGAAAAGGCGAAAGCTG
TTGCCAAGCCGGAAACGGCCAAGGGTGCGACAAAGTCTTCCAAGCCTGCCGACAAGGCATGA
ATGGCACAGACGAGCGCGGCAAAGGGAGCCGCACAGAACAAGTCCGCGAACGGCATCGACCCGCGTCGTCAGGCCGCGCT
CGATACGGCGCTCGCGCAGGTCGAGAAGAATTTCGGCAAGGGGTCGGCCATGCGATTAGGCGATCGTCCCGAGCAGGATG
TCGAGGTGATTCCAACCGGATCACTGGCATTGGATATGGCATTGGGCATCGGCGGTTTGCCGAAGGGGCGTATTGTGGAG
ATCTACGGCCCGGAATCCTCTGGCAAGACCACGCTGGCGCTGCATGTGGTGGCCAATGCCCAGAAAAGCGGTGGAGTCGC
CGCGTTCATCGACGCGGAGCATGCGCTTGATCCTGTCTATGCGCGCAAGCTTGGCGTCGACACGGATTCGCTGATCGTCT
CTCAGCCCGATAACGGCGAACAGGCGCTGGAGATAGCGGATATGCTGATTCGTTCCGGCGCTCTTGACGTGATTGTCATC
GATTCCGTGGCGGCATTGGTGCCGAAGGCCGAAATCGAAGGTGAGATGGGCGACAGCCATGTCGGTTTGCAGGCGCGACT
GATGAGCCAGGCATTGCGTAAGATGACTGGCGCTTTGGCCCAGGCGGGCACCACGGCCATCTTCATCAACCAGCTTCGCG
AGAAGATCGGCGTGTTCTTCGGCAATCCGGAAACGACCACCGGTGGCAAGGCGTTGAAGTTCTACTCGTCCGTCCGCATG
GATATTCGTCGCATCCAGACCATCAAGAACGGCGACGAGGCTGTGGGCAACCGTACCAAGGTCAAGGTCGTCAAGAACAA
GATGGCTCCGCCGTTCAAGACTGCTGAGTTCGATGTGCTGTACGGCGAGGGGATTTCCAAAGAAGGATCTGTGCTTGACA
TGGCGTTGCAGGTCAATGTCGTGAAGAAGTCCGGATCGTGGTTCACGTATGGTGGCGACCAACTGGGGCAGGGGCGTGAG
AACGTGCGTCAGTTCCTCAAAGACAACCCGGAGCTCACTGAAGAGATCGAGAATAAGGTGAAAGCCGAATTCGGACTCAT
TGAGCCTACCGACCAATTCGCCGAGGATGGTAACGATGCGTCGGCGAAGGATACGAAAGGCGAGGAAAAGGCGAAAGCTG
TTGCCAAGCCGGAAACGGCCAAGGGTGCGACAAAGTCTTCCAAGCCTGCCGACAAGGCATGA
Similar proteins
Only experimentally validated proteins are listed.