Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   YSQ_RS09280 Genome accession   NZ_CP007183
Coordinates   1768610..1769641 (-) Length   343 a.a.
NCBI ID   WP_002779414.1    Uniprot ID   A0A0Q2IZL1
Organism   Campylobacter coli RM1875     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1763610..1774641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSQ_RS09230 (YSQ_09520) - 1763683..1764822 (-) 1140 WP_002782634.1 tyrosine-type recombinase/integrase -
  YSQ_RS09260 (YSQ_09555) - 1765606..1766445 (-) 840 WP_002791653.1 DNA ligase -
  YSQ_RS09265 (YSQ_09560) - 1766445..1767107 (-) 663 WP_002839178.1 AMIN domain-containing protein -
  YSQ_RS09270 (YSQ_09565) - 1767097..1767300 (-) 204 WP_002839177.1 hypothetical protein -
  YSQ_RS09275 (YSQ_09570) eno 1767366..1768610 (-) 1245 WP_002839176.1 phosphopyruvate hydratase -
  YSQ_RS09280 (YSQ_09575) recA 1768610..1769641 (-) 1032 WP_002779414.1 recombinase RecA Machinery gene
  YSQ_RS09285 (YSQ_09580) - 1769751..1770614 (+) 864 WP_002780012.1 menaquinone biosynthesis family protein -
  YSQ_RS09290 (YSQ_09585) fliQ 1770626..1770895 (+) 270 WP_002779416.1 flagellar biosynthesis protein FliQ -
  YSQ_RS09295 (YSQ_09590) - 1770892..1771668 (+) 777 WP_002809719.1 UDP-N-acetylmuramate dehydrogenase -
  YSQ_RS10305 (YSQ_09595) - 1771777..1771950 (+) 174 WP_002779418.1 hypothetical protein -
  YSQ_RS09300 (YSQ_09600) - 1771955..1772716 (-) 762 WP_002780011.1 hypothetical protein -
  YSQ_RS09305 (YSQ_09605) - 1772753..1773517 (-) 765 WP_002780009.1 3'(2'),5'-bisphosphate nucleotidase CysQ -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37135.40 Da        Isoelectric Point: 4.9075

>NTDB_id=117222 YSQ_RS09280 WP_002779414.1 1768610..1769641(-) (recA) [Campylobacter coli RM1875]
MDDNKKKSLDAALKSLDKAFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGIPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KEIQNSMGIEGMISSSEDEEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=117222 YSQ_RS09280 WP_002779414.1 1768610..1769641(-) (recA) [Campylobacter coli RM1875]
ATGGACGATAATAAGAAAAAATCGCTTGATGCCGCCTTAAAATCGCTCGATAAAGCTTTTGGCAAGGGCACTATTTTAAG
GCTTGGAGATAAGGAAGTAGAGCAGATTGATAGCATAGGAACAGGTTCTGTAGGACTTGATCTTGCACTTGGTATAGGCG
GAATTCCAAAAGGAAGAATTATTGAAATTTATGGGCCTGAAAGTTCAGGTAAAACAACTTTAACTTTGCATATTATAGCA
GAGTGTCAAAAAGCGGGTGGGGTTTGTGCCTTTATCGATGCTGAGCATGCTTTGGATGTAAAATATGCTAAAAATTTGGG
CGTAGATACAGATAATCTTTATATTTCTCAACCCGATTTTGGTGAGCAGGCTTTAGAGATCGTTGAAACCATAGCACGAA
GTGGGGCTATAGATTTGATAGTTGTAGATAGCGTTGCGGCGCTTACTCCAAAAGCTGAAATCGAAGGCGATATGGGAGAT
CAGCATGTAGGGCTTCAAGCAAGACTTATGTCTCAAGCATTAAGAAAGCTTACAGGAATTGTCCATAAAATGAATACAAC
CGTGATTTTTATCAACCAAATTCGTATGAAAATTGGCGCTATGGGTTATGGAACTCCTGAAACAACAACAGGAGGAAATG
CACTCAAATTTTATGCTTCAGTGCGTTTAGATGTTAGAAAAGTAGCGACTTTAAAACAAAATGAAGAGCCTATTGGTAAC
CGTGTTAAAGTTAAAGTAGTAAAAAATAAAGTAGCACCTCCATTTAGACAAGCTGAATTTGATGTAATGTTTGGAGAGGG
TTTAAGCCGTGAGGGTGAATTGATCGATTATGGTGTAAAACTTGATATAGTAGATAAAAGTGGTGCTTGGTTTTCTTATA
AAGATAAAAAATTGGGTCAAGGTAGAGAAAATTCAAAAGCTTTCTTAAAAGAAAATCCAGAAATAGCTGATGAAATTACC
AAAGAAATTCAAAATTCTATGGGTATAGAAGGCATGATTAGCAGTAGCGAAGATGAAGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2IZL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.085

100

0.971
  recA Helicobacter pylori 26695

77.551

100

0.776
  recA Helicobacter pylori strain NCTC11637

77.259

100

0.773
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae strain FA1090

65.103

99.417

0.647
  recA Glaesserella parasuis strain SC1401

63.265

100

0.633
  recA Acinetobacter baylyi ADP1

63.265

100

0.633
  recA Acinetobacter baumannii D1279779

62.682

100

0.627
  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.627

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

96.793

0.609
  recA Pseudomonas stutzeri DSM 10701

63.914

95.335

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.303

95.335

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.58

94.461

0.601
  recA Vibrio cholerae strain A1552

63.58

94.461

0.601
  recA Streptococcus pneumoniae D39

58.358

99.417

0.58
  recA Streptococcus pneumoniae Rx1

58.358

99.417

0.58
  recA Streptococcus pneumoniae R6

58.358

99.417

0.58
  recA Streptococcus pneumoniae TIGR4

58.358

99.417

0.58
  recA Streptococcus mitis NCTC 12261

57.31

99.708

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

56.433

99.708

0.563
  recA Streptococcus pyogenes NZ131

57.879

96.21

0.557
  recA Streptococcus mitis SK321

57.751

95.918

0.554
  recA Streptococcus mutans UA159

57.402

96.501

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.025

94.461

0.548
  recA Lactococcus lactis subsp. cremoris KW2

56.839

95.918

0.545

Multiple sequence alignment