Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   YSU_RS08315 Genome accession   NZ_CP007179
Coordinates   1639123..1640154 (-) Length   343 a.a.
NCBI ID   WP_002800259.1    Uniprot ID   -
Organism   Campylobacter coli RM5611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1634123..1645154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSU_RS09450 (YSU_08430) - 1634462..1634596 (-) 135 WP_002779408.1 hypothetical protein -
  YSU_RS08265 (YSU_08435) proB 1634675..1635430 (-) 756 WP_002779409.1 glutamate 5-kinase -
  YSU_RS08295 (YSU_08465) - 1636119..1636958 (-) 840 WP_002779410.1 DNA ligase -
  YSU_RS08300 (YSU_08470) - 1636958..1637620 (-) 663 WP_002780014.1 AMIN domain-containing protein -
  YSU_RS08305 (YSU_08475) - 1637610..1637813 (-) 204 WP_002779412.1 hypothetical protein -
  YSU_RS08310 (YSU_08480) eno 1637879..1639123 (-) 1245 WP_002800256.1 phosphopyruvate hydratase -
  YSU_RS08315 (YSU_08485) recA 1639123..1640154 (-) 1032 WP_002800259.1 recombinase RecA Machinery gene
  YSU_RS08320 (YSU_08490) - 1640264..1641127 (+) 864 WP_002779415.1 menaquinone biosynthesis family protein -
  YSU_RS08325 (YSU_08495) fliQ 1641139..1641408 (+) 270 WP_002779416.1 flagellar biosynthesis protein FliQ -
  YSU_RS08330 (YSU_08500) - 1641405..1642181 (+) 777 WP_002779417.1 UDP-N-acetylmuramate dehydrogenase -
  YSU_RS09180 (YSU_08505) - 1642290..1642463 (+) 174 WP_002779418.1 hypothetical protein -
  YSU_RS08335 (YSU_08510) - 1642468..1643229 (-) 762 WP_002780011.1 hypothetical protein -
  YSU_RS08340 (YSU_08515) - 1643266..1644030 (-) 765 WP_002780009.1 3'(2'),5'-bisphosphate nucleotidase CysQ -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37005.26 Da        Isoelectric Point: 4.9784

>NTDB_id=117174 YSU_RS08315 WP_002800259.1 1639123..1640154(-) (recA) [Campylobacter coli RM5611]
MDDNKKKSLDAALKSLDKAFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGIPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSMGIEGMISGSEDDEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=117174 YSU_RS08315 WP_002800259.1 1639123..1640154(-) (recA) [Campylobacter coli RM5611]
ATGGACGATAATAAGAAAAAATCGCTTGATGCCGCCTTAAAATCGCTCGATAAAGCTTTTGGCAAGGGCACTATTTTAAG
GCTTGGAGATAAGGAAGTAGAGCAGATTGATAGCATAGGAACAGGTTCTGTAGGACTTGATCTTGCACTTGGTATAGGCG
GAATTCCAAAAGGAAGAATTATTGAAATTTATGGGCCTGAAAGTTCAGGTAAAACCACTCTAACTCTACACATTATCGCA
GAATGCCAAAAAGCAGGTGGAGTTTGTGCTTTTATCGATGCAGAACATGCGCTTGATGTGAAATATGCTAAAAATTTAGG
TGTAAATACAGATGATTTGTATGTTTCTCAACCTGATTTTGGAGAGCAAGCCTTAGAAATTGTAGAAACTATAGCAAGAA
GTGGTGCAGTAGATCTTATTGTAGTAGATAGCGTTGCAGCACTTACCCCAAAAGCAGAAATTGAAGGCGATATGGGCGAT
CAACATGTAGGACTTCAAGCAAGACTTATGTCTCAAGCTCTAAGAAAACTTACAGGTATAGTTCATAAAATGAATACCAC
AGTAATTTTCATCAACCAAATTCGTATGAAAATCGGTGCTATGGGTTATGGTACTCCTGAAACCACAACAGGTGGAAATG
CATTAAAATTTTATGCTTCTGTGCGTTTAGATGTTAGAAAAGTAGCAACCTTAAAACAAAACGAAGAACCTATAGGAAAC
CGCGTTAAAGTAAAAGTAGTTAAAAATAAAGTTGCTCCTCCATTCAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TTTAAGCCGTGAAGGTGAATTGATCGATTATGGTGTAAAACTTGATATCGTAGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAATTCAAAAGCTTTCTTAAAAGAAAACCCTGAAATTGCAGATGAAATCACA
AAAGCGATTCAAAATTCTATGGGAATAGAAGGTATGATCAGCGGTAGCGAAGATGACGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.125

100

0.991
  recA Helicobacter pylori 26695

78.963

95.627

0.755
  recA Helicobacter pylori strain NCTC11637

78.659

95.627

0.752
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae strain FA1090

65.103

99.417

0.647
  recA Acinetobacter baylyi ADP1

62.974

100

0.63
  recA Pseudomonas stutzeri DSM 10701

65.138

95.335

0.621
  recA Glaesserella parasuis strain SC1401

65.337

95.044

0.621
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.793

0.618
  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.627

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.506

94.461

0.609
  recA Vibrio cholerae strain A1552

64.506

94.461

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

95.335

0.609
  recA Streptococcus pneumoniae D39

58.824

99.125

0.583
  recA Streptococcus pneumoniae Rx1

58.824

99.125

0.583
  recA Streptococcus pneumoniae R6

58.824

99.125

0.583
  recA Streptococcus pneumoniae TIGR4

58.824

99.125

0.583
  recA Streptococcus mitis NCTC 12261

58.967

95.918

0.566
  recA Streptococcus pyogenes NZ131

58.485

96.21

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

59.021

95.335

0.563
  recA Streptococcus mitis SK321

58.359

95.918

0.56
  recA Streptococcus mutans UA159

58.006

96.501

0.56
  recA Lactococcus lactis subsp. cremoris KW2

57.447

95.918

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.81

92.128

0.551

Multiple sequence alignment