Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFY5O_RS09500 Genome accession   NZ_OZ186757
Coordinates   1928685..1929761 (-) Length   358 a.a.
NCBI ID   WP_004842695.1    Uniprot ID   A0A829NGY6
Organism   Mediterraneibacter gnavus isolate LUMC_Rgna_QRD032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1923685..1934761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFY5O_RS09475 - 1923870..1925189 (+) 1320 WP_022037080.1 oligosaccharide flippase family protein -
  ACFY5O_RS09480 - 1925186..1925719 (-) 534 WP_004842702.1 hypothetical protein -
  ACFY5O_RS09485 - 1925778..1926323 (-) 546 WP_022037081.1 NUDIX hydrolase -
  ACFY5O_RS09490 rny 1926419..1927951 (-) 1533 WP_373120411.1 ribonuclease Y -
  ACFY5O_RS09495 - 1928067..1928681 (-) 615 WP_022037082.1 regulatory protein RecX -
  ACFY5O_RS09500 recA 1928685..1929761 (-) 1077 WP_004842695.1 recombinase RecA Machinery gene
  ACFY5O_RS09505 - 1930093..1931508 (-) 1416 WP_022037083.1 glycoside hydrolase family 1 protein -
  ACFY5O_RS09510 - 1931508..1932443 (-) 936 WP_101883977.1 ROK family protein -
  ACFY5O_RS09515 - 1932460..1933377 (-) 918 WP_022037085.1 nucleoside hydrolase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39023.83 Da        Isoelectric Point: 5.1364

>NTDB_id=1168617 ACFY5O_RS09500 WP_004842695.1 1928685..1929761(-) (recA) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD032]
MASDEKKKALDAAIAKLEKDFGKGTVMKLGEGSHVAVETVPTGCLSLDLALGLGGVPKGRVIEVYGPESSGKTTVTLHMI
AEVQKRGGIAGFIDAEHALDPVYAKKIGVDIDELYISQPDSGDQALEIAETMVRSGAVDIIVIDSVAALVPKQEIEGDMG
DSHVGLQARLMSQALRKLTPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVGN
RTRIKIVKNKIAPPFKEAEFDIMFGKGISKEGDVLDLAVGIDLVKKSGAWYAYEGEKIGQGRENAKAYLTSHPEVMEELD
RKVRQHYHLIEGEEEVKESDLKLTPKEEQMELSIEGEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1168617 ACFY5O_RS09500 WP_004842695.1 1928685..1929761(-) (recA) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD032]
ATGGCAAGTGATGAAAAGAAAAAAGCGCTGGATGCGGCGATTGCAAAGTTAGAGAAGGATTTTGGAAAAGGTACTGTGAT
GAAGCTGGGAGAGGGCAGTCATGTTGCTGTAGAGACGGTTCCTACAGGGTGTCTGAGTCTAGATCTGGCACTGGGACTTG
GCGGTGTTCCAAAGGGACGTGTGATTGAGGTTTACGGTCCGGAGTCCAGTGGTAAGACGACAGTGACACTCCACATGATC
GCAGAAGTACAAAAGAGAGGCGGGATTGCAGGATTTATTGATGCAGAGCATGCTCTGGATCCTGTTTATGCGAAGAAGAT
CGGAGTAGATATTGATGAATTATATATTTCACAGCCTGACAGCGGAGATCAGGCTCTGGAGATTGCTGAGACGATGGTGC
GCTCCGGAGCAGTGGATATTATTGTGATTGACTCTGTTGCGGCCCTCGTGCCAAAGCAGGAGATCGAAGGAGATATGGGA
GACAGTCATGTCGGCCTGCAGGCGAGACTGATGTCGCAGGCACTGCGTAAGCTGACACCAGTCATCAGCAAATCCAACTG
TGTGGTTATCTTTATCAACCAGCTCCGTGAAAAGGTAGGCGTAATGTTTGGAAATCCAGAGACAACGACAGGTGGACGCG
CATTGAAGTTCTACGCTTCTGTTCGTATGGATGTCCGCAGGATCGAGACGCTGAAGCAGAGCGGAGAGATGGTCGGCAAC
AGAACCCGCATCAAGATCGTGAAGAATAAGATTGCGCCTCCGTTTAAAGAGGCAGAGTTTGATATCATGTTTGGAAAAGG
AATCTCCAAAGAAGGAGATGTTCTGGATCTGGCAGTTGGTATTGATCTTGTCAAGAAGAGTGGTGCGTGGTATGCATATG
AAGGAGAGAAGATCGGACAGGGACGTGAGAATGCAAAAGCATATCTGACCAGTCATCCGGAGGTGATGGAGGAGCTGGAC
AGAAAAGTACGCCAGCACTATCATCTGATCGAAGGAGAGGAAGAGGTAAAAGAGAGTGATCTGAAGCTGACTCCAAAAGA
AGAACAGATGGAACTGTCGATCGAGGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829NGY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae Rx1

62.5

98.324

0.615
  recA Streptococcus pneumoniae D39

62.5

98.324

0.615
  recA Streptococcus pneumoniae R6

62.5

98.324

0.615
  recA Streptococcus pneumoniae TIGR4

62.5

98.324

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

67.385

90.782

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

62.069

97.207

0.603
  recA Streptococcus mutans UA159

59.777

100

0.598
  recA Streptococcus mitis SK321

63.772

93.296

0.595
  recA Streptococcus mitis NCTC 12261

63.473

93.296

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.179

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

91.899

0.584
  recA Lactococcus lactis subsp. cremoris KW2

62.575

93.296

0.584
  recA Streptococcus pyogenes NZ131

63.11

91.62

0.578
  recA Acinetobacter baumannii D1279779

63.777

90.223

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

89.944

0.57
  recA Vibrio cholerae strain A1552

63.354

89.944

0.57
  recA Neisseria gonorrhoeae MS11

60.059

94.413

0.567
  recA Neisseria gonorrhoeae strain FA1090

60.059

94.413

0.567
  recA Neisseria gonorrhoeae MS11

60.059

94.413

0.567
  recA Acinetobacter baylyi ADP1

62.848

90.223

0.567
  recA Pseudomonas stutzeri DSM 10701

58.501

96.927

0.567
  recA Helicobacter pylori 26695

61.774

91.341

0.564
  recA Helicobacter pylori strain NCTC11637

61.774

91.341

0.564
  recA Glaesserella parasuis strain SC1401

62.112

89.944

0.559
  recA Ralstonia pseudosolanacearum GMI1000

63.871

86.592

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.006

89.944

0.531

Multiple sequence alignment