Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABQ271_RS04975 Genome accession   NZ_OZ075067
Coordinates   1020453..1021511 (+) Length   352 a.a.
NCBI ID   WP_349310407.1    Uniprot ID   -
Organism   Microbacterium sp. MM2322 isolate Microbacterium MM2322 assembly     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1015453..1026511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ271_RS04950 (MMM2322_00983) - 1015667..1018387 (+) 2721 WP_349310402.1 DNA translocase FtsK -
  ABQ271_RS04955 (MMM2322_00984) pgsA 1018422..1018988 (+) 567 WP_349310403.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABQ271_RS04960 (MMM2322_00985) - 1018988..1019524 (+) 537 WP_349310404.1 CinA family protein -
  ABQ271_RS04965 (MMM2322_00986) - 1019675..1019995 (+) 321 WP_349310405.1 helix-turn-helix transcriptional regulator -
  ABQ271_RS04970 (MMM2322_00987) - 1020005..1020226 (+) 222 WP_349310406.1 DUF3046 domain-containing protein -
  ABQ271_RS04975 (MMM2322_00988) recA 1020453..1021511 (+) 1059 WP_349310407.1 recombinase RecA Machinery gene
  ABQ271_RS04980 (MMM2322_00989) - 1021514..1022236 (+) 723 WP_349310408.1 regulatory protein RecX -
  ABQ271_RS04985 (MMM2322_00990) - 1022304..1023224 (+) 921 WP_349310409.1 ABC transporter ATP-binding protein -
  ABQ271_RS04990 (MMM2322_00991) - 1023221..1024099 (+) 879 WP_349310410.1 ABC transporter permease -
  ABQ271_RS04995 (MMM2322_00992) miaB 1024148..1025704 (+) 1557 WP_349310411.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37683.00 Da        Isoelectric Point: 5.5421

>NTDB_id=1166550 ABQ271_RS04975 WP_349310407.1 1020453..1021511(+) (recA) [Microbacterium sp. MM2322 isolate Microbacterium MM2322 assembly]
MPSPADREKALESALAQIDRQFGKGSIMRLGSDERAPVEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTLTLHA
IANAQRNGGIAAFIDAEHALDPNYAEKLGVDIDALLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEM
GDSHVGLQARLMSQALRKITGGLSQTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGAWYTYEGEQLGQGKENSRNFLLKNTDVAADI
ENKIKQKLGIGQPKVEIEDVAAPDELTARRPA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1166550 ABQ271_RS04975 WP_349310407.1 1020453..1021511(+) (recA) [Microbacterium sp. MM2322 isolate Microbacterium MM2322 assembly]
ATGCCATCACCTGCCGACCGCGAAAAGGCCCTCGAATCGGCCCTCGCCCAGATCGACCGCCAGTTCGGCAAGGGATCGAT
CATGCGACTCGGGAGCGACGAGCGCGCACCGGTCGAGGTCATCCCGACCGGATCGATCGCCCTCGATGTCGCCCTGGGGA
TCGGCGGTCTCCCGCGCGGCCGTGTCGTCGAGATCTACGGCCCGGAGTCGTCGGGAAAGACGACCTTGACGCTCCATGCC
ATCGCCAACGCGCAGCGCAACGGCGGGATCGCGGCCTTCATCGATGCAGAGCACGCGCTCGACCCCAACTATGCCGAGAA
GCTCGGTGTCGACATCGACGCGCTTCTCGTCTCGCAGCCCGACACCGGAGAGCAGGCCCTCGAGATCGCTGACATGCTGA
TCCGTTCCGGTGCCATCGACCTGGTCGTCATCGACTCCGTCGCCGCATTGGTGCCCGAGGCCGAGATCAAGGGCGAGATG
GGCGACTCCCACGTCGGTCTGCAGGCTCGACTCATGTCGCAGGCTCTCCGAAAGATCACGGGTGGCTTGAGCCAGACGAA
GACCACGGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTCTTCTTCGGCTCGCCCGAGACGACCGCCGGCGGTA
AGGCTCTCAAGTTCTACGCGTCCGTGCGACTGGACATCCGCCGTATCGAGACGCTCAAGGACGGCTCCGACGCTGTCGGC
AACCGGACGCGTGTCAAGGTCGTCAAGAACAAGATGGCTCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGGGT
CGGGATCTCCCGCGAGGGCAGCCTCATCGACTTCGGCGTCGAGCACGGGATCGTCAAGAAGTCCGGTGCCTGGTACACGT
ACGAGGGCGAGCAGCTCGGCCAGGGCAAGGAGAACTCGCGCAACTTCCTGCTCAAGAACACCGACGTCGCTGCCGATATC
GAGAACAAGATCAAGCAGAAGCTCGGGATCGGTCAGCCGAAGGTCGAGATCGAGGATGTCGCGGCGCCTGACGAGCTGAC
GGCTCGGCGCCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

64.431

97.443

0.628
  recA Neisseria gonorrhoeae MS11

63.112

98.58

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.112

98.58

0.622
  recA Neisseria gonorrhoeae MS11

63.112

98.58

0.622
  recA Ralstonia pseudosolanacearum GMI1000

69.01

88.92

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

92.614

0.611
  recA Pseudomonas stutzeri DSM 10701

66.254

91.761

0.608
  recA Acinetobacter baylyi ADP1

65.944

91.761

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.325

91.761

0.599
  recA Vibrio cholerae strain A1552

65.325

91.761

0.599
  recA Helicobacter pylori 26695

60.694

98.295

0.597
  recA Helicobacter pylori strain NCTC11637

60.694

98.295

0.597
  recA Lactococcus lactis subsp. cremoris KW2

62.727

93.75

0.588
  recA Streptococcus mitis SK321

61.818

93.75

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

62.769

92.33

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

92.614

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

93.466

0.577
  recA Streptococcus pneumoniae D39

61.212

93.75

0.574
  recA Streptococcus pneumoniae R6

61.212

93.75

0.574
  recA Streptococcus pneumoniae Rx1

61.212

93.75

0.574
  recA Streptococcus mitis NCTC 12261

61.212

93.75

0.574
  recA Streptococcus pneumoniae TIGR4

61.212

93.75

0.574
  recA Glaesserella parasuis strain SC1401

61.846

92.33

0.571
  recA Streptococcus mutans UA159

61.094

93.466

0.571
  recA Streptococcus pyogenes NZ131

60.366

93.182

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

90.909

0.534

Multiple sequence alignment