Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3223_RS01555 Genome accession   NZ_OZ061351
Coordinates   304351..305424 (+) Length   357 a.a.
NCBI ID   WP_057783733.1    Uniprot ID   A0A176TGR2
Organism   Pediococcus parvulus isolate Pediococcus parvulus IOEB-8801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 299351..310424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3223_RS01530 - 299356..300660 (+) 1305 WP_068808055.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB3223_RS01535 - 300657..301382 (+) 726 WP_367370907.1 elongation factor P 5-aminopentanone reductase -
  AB3223_RS01540 - 301455..302336 (+) 882 WP_317762580.1 helix-turn-helix domain-containing protein -
  AB3223_RS01545 pgsA 302352..302936 (+) 585 WP_057783738.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3223_RS01550 - 303035..304261 (+) 1227 WP_367370908.1 competence/damage-inducible protein A -
  AB3223_RS01555 recA 304351..305424 (+) 1074 WP_057783733.1 recombinase RecA Machinery gene
  AB3223_RS01560 rny 305774..307333 (+) 1560 WP_057783731.1 ribonuclease Y -
  AB3223_RS01565 mutS 307533..310172 (+) 2640 WP_057783729.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38802.97 Da        Isoelectric Point: 5.1248

>NTDB_id=1166062 AB3223_RS01555 WP_057783733.1 304351..305424(+) (recA) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-8801]
MADEQRKAALNAALKKIEKNFGKGSIMRMGDAAQTQISTISTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAV
AQVQKEGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGTDIIGN
RVRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIIDMAVEKDIVNKSGSWYSYGDERIGQGRENAKQYLEDNPEKREEIY
KKVRAAYNMDPEAEAVKDKDKEKKDPSELDLEVSDKK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1166062 AB3223_RS01555 WP_057783733.1 304351..305424(+) (recA) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-8801]
TTGGCTGATGAACAACGAAAAGCAGCTTTAAATGCTGCATTAAAAAAAATTGAGAAAAATTTTGGAAAAGGTTCCATTAT
GCGAATGGGTGATGCTGCCCAAACTCAAATTTCAACGATTTCTACTGGATCCTTAGCACTAGATGATGCATTGGGTGTTG
GTGGTTATCCGCGTGGACGAATCGTAGAAGTTTATGGACCTGAAAGCTCTGGTAAAACTACGGTTGCGCTTCACGCTGTT
GCTCAAGTTCAAAAAGAAGGCGGCACAGCAGCTTATATTGATGCAGAAAATGCATTAGACCCTGTCTATGCAGAACACCT
AGGGGTTAACATTGATGATTTATTGCTATCTCAACCAGATACTGGTGAAGAAGGTTTGGAAATTACAGATGCATTAGTTT
CTAGTGGTGCAGTTGATTTAGTGGTTGTTGACTCAGTTGCGGCTTTGGTTCCTCGTGCCGAAATTGAAGGCGAGATGGGG
GATGCCCACGTTGGATTGCAGGCGCGTTTGATGTCACAAGCATTACGTAAACTATCCGGATCAATTAATAAAACCAAAAC
GATTGCAATTTTTATTAATCAAATTCGGGAAAAAGTTGGAGTTATGTTTGGTAATCCTGAAACAACACCTGGTGGTCGTG
CATTGAAGTTTTATGCAACTATTCGATTAGAAGTACGACGGGCGGAACAGATTAAGGATGGTACCGATATTATTGGGAAC
CGTGTTCGAATTAAAGTAGTCAAGAACAAGGTAGCACCACCATTTAAACGTGCAGAAGTTGATATTATGTATGGACATGG
TATTTCTCAGACTGGTGAAATTATTGATATGGCTGTCGAGAAAGACATTGTTAATAAGAGTGGTTCTTGGTATTCATACG
GTGATGAACGCATTGGTCAGGGCCGTGAGAATGCAAAGCAATATTTGGAAGACAATCCAGAAAAACGCGAAGAAATTTAC
AAGAAGGTTCGTGCAGCCTACAATATGGATCCAGAAGCAGAGGCTGTAAAGGATAAGGATAAAGAAAAAAAGGATCCTTC
CGAGTTGGATTTGGAAGTTTCAGATAAAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A176TGR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.105

96.359

0.782
  recA Bacillus subtilis subsp. subtilis str. 168

74.545

92.437

0.689
  recA Streptococcus mitis SK321

67.232

99.16

0.667
  recA Streptococcus mitis NCTC 12261

66.949

99.16

0.664
  recA Streptococcus pneumoniae R6

68.012

97.199

0.661
  recA Streptococcus pneumoniae Rx1

68.012

97.199

0.661
  recA Streptococcus pneumoniae D39

68.012

97.199

0.661
  recA Streptococcus pneumoniae TIGR4

68.012

97.199

0.661
  recA Streptococcus mutans UA159

65.193

100

0.661
  recA Streptococcus pyogenes NZ131

69.789

92.717

0.647
  recA Lactococcus lactis subsp. cremoris KW2

67.665

93.557

0.633
  recA Pseudomonas stutzeri DSM 10701

64.087

90.476

0.58
  recA Neisseria gonorrhoeae MS11

63.497

91.317

0.58
  recA Neisseria gonorrhoeae strain FA1090

63.497

91.317

0.58
  recA Neisseria gonorrhoeae MS11

63.497

91.317

0.58
  recA Ralstonia pseudosolanacearum GMI1000

65.397

88.235

0.577
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.424

92.437

0.577
  recA Vibrio cholerae strain A1552

62.424

92.437

0.577
  recA Acinetobacter baumannii D1279779

59.184

96.078

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.037

90.756

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.48

95.798

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.976

91.877

0.56
  recA Glaesserella parasuis strain SC1401

60.303

92.437

0.557
  recA Acinetobacter baylyi ADP1

61.491

90.196

0.555
  recA Helicobacter pylori 26695

57.018

95.798

0.546
  recA Helicobacter pylori strain NCTC11637

57.018

95.798

0.546

Multiple sequence alignment