Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3219_RS07220 Genome accession   NZ_OZ061250
Coordinates   1458677..1459738 (+) Length   353 a.a.
NCBI ID   WP_216753437.1    Uniprot ID   -
Organism   Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1453677..1464738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3219_RS07195 - 1453689..1454996 (+) 1308 WP_216753433.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB3219_RS07200 - 1454993..1455718 (+) 726 WP_216753434.1 elongation factor P 5-aminopentanone reductase -
  AB3219_RS07205 - 1455789..1456667 (+) 879 WP_216753435.1 helix-turn-helix domain-containing protein -
  AB3219_RS07210 pgsA 1456683..1457267 (+) 585 WP_057807063.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3219_RS07215 - 1457361..1458587 (+) 1227 WP_216753436.1 competence/damage-inducible protein A -
  AB3219_RS07220 recA 1458677..1459738 (+) 1062 WP_216753437.1 recombinase RecA Machinery gene
  AB3219_RS07225 rny 1459952..1461511 (+) 1560 WP_216753438.1 ribonuclease Y -
  AB3219_RS07230 mutS 1461705..1464344 (+) 2640 WP_216753439.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38303.41 Da        Isoelectric Point: 5.2207

>NTDB_id=1165619 AB3219_RS07220 WP_216753437.1 1458677..1459738(+) (recA) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
MADEQRKAALNAALKKIEKNFGKGSIMRMGDAAQTQISTISTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAV
AQVQKEGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGTDIIGN
RVRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIIDMAVEKDIVNKSGSWYSYGDERIGQGRENAKQYLEDNPEKRKEIY
DKVRSAYNMDAEVDAPKEEKDPSELDLKVSNKK

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1165619 AB3219_RS07220 WP_216753437.1 1458677..1459738(+) (recA) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
TTGGCTGATGAACAACGAAAAGCAGCTTTAAATGCTGCGCTTAAAAAGATTGAAAAAAACTTTGGAAAAGGCTCAATTAT
GCGGATGGGTGATGCTGCCCAAACTCAAATTTCAACAATCTCGACTGGATCACTAGCACTAGATGATGCTTTGGGTGTTG
GGGGTTATCCTCGTGGACGAATTGTTGAAGTTTATGGTCCTGAAAGTTCTGGTAAAACGACCGTTGCCTTGCACGCTGTT
GCACAAGTTCAAAAGGAAGGCGGAACTGCAGCTTATATTGATGCAGAAAATGCCCTGGATCCTGTTTACGCGGAGCATTT
GGGTGTTAATATTGATGATTTGTTACTTTCACAACCAGATACTGGTGAAGAAGGCCTTGAAATCACCGATGCTTTGGTTT
CTAGCGGTGCCGTTGATTTAGTGGTCGTTGATTCCGTTGCCGCTTTAGTTCCTCGAGCTGAAATTGAAGGTGAAATGGGT
GATGCTCACGTTGGTTTACAAGCTCGTTTGATGTCGCAAGCACTACGTAAGCTTTCTGGATCAATTAACAAAACTAAGAC
GATCGCAATTTTTATTAATCAGATTCGTGAAAAAGTTGGTGTTATGTTTGGTAATCCTGAAACAACTCCAGGTGGGCGAG
CATTAAAGTTCTATGCAACCATTCGACTAGAAGTTCGTCGTGCTGAACAAATTAAAGATGGCACTGATATTATTGGTAAC
CGCGTTCGAATTAAAGTTGTCAAGAACAAGGTTGCACCGCCATTCAAGCGTGCTGAAGTTGATATCATGTATGGTCATGG
TATTTCACAGACTGGTGAAATTATTGATATGGCTGTTGAAAAGGATATTGTGAACAAGAGCGGTTCTTGGTATTCTTATG
GTGATGAACGAATTGGACAAGGCCGTGAAAATGCTAAACAGTATTTGGAGGATAATCCTGAAAAACGTAAAGAAATTTAC
GATAAGGTTCGTTCTGCCTACAATATGGACGCCGAAGTAGATGCGCCTAAGGAAGAAAAAGATCCTTCTGAATTAGATTT
AAAAGTTTCCAATAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.105

97.45

0.79
  recA Bacillus subtilis subsp. subtilis str. 168

74.545

93.484

0.697
  recA Streptococcus mitis NCTC 12261

68.012

98.3

0.669
  recA Streptococcus mitis SK321

68.915

96.601

0.666
  recA Streptococcus pyogenes NZ131

69.789

93.768

0.654
  recA Streptococcus pneumoniae D39

70.213

93.201

0.654
  recA Streptococcus pneumoniae Rx1

70.213

93.201

0.654
  recA Streptococcus pneumoniae R6

70.213

93.201

0.654
  recA Streptococcus pneumoniae TIGR4

70.213

93.201

0.654
  recA Streptococcus mutans UA159

68.882

93.768

0.646
  recA Lactococcus lactis subsp. cremoris KW2

67.761

94.901

0.643
  recA Neisseria gonorrhoeae MS11

60.641

97.167

0.589
  recA Neisseria gonorrhoeae MS11

60.641

97.167

0.589
  recA Neisseria gonorrhoeae strain FA1090

60.641

97.167

0.589
  recA Pseudomonas stutzeri DSM 10701

63.777

91.501

0.584
  recA Acinetobacter baylyi ADP1

59.078

98.3

0.581
  recA Ralstonia pseudosolanacearum GMI1000

66.558

87.252

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

91.218

0.578
  recA Vibrio cholerae strain A1552

63.354

91.218

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.037

91.785

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

92.918

0.564
  recA Glaesserella parasuis strain SC1401

61.491

91.218

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.112

96.034

0.558
  recA Acinetobacter baumannii D1279779

61.18

91.218

0.558
  recA Helicobacter pylori 26695

57.602

96.884

0.558
  recA Helicobacter pylori strain NCTC11637

57.602

96.884

0.558

Multiple sequence alignment