Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Z042_RS22555 Genome accession   NZ_CP007044
Coordinates   5064126..5065190 (-) Length   354 a.a.
NCBI ID   WP_024910464.1    Uniprot ID   W0LG81
Organism   Chania multitudinisentens RB-25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5059126..5070190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Z042_RS22540 (Z042_18080) csrA 5060331..5060516 (-) 186 WP_004091602.1 carbon storage regulator CsrA -
  Z042_RS22545 (Z042_18075) alaS 5060767..5063394 (-) 2628 WP_024910466.1 alanine--tRNA ligase -
  Z042_RS22550 (Z042_18070) recX 5063528..5064028 (-) 501 WP_024910465.1 recombination regulator RecX -
  Z042_RS22555 (Z042_18065) recA 5064126..5065190 (-) 1065 WP_024910464.1 recombinase RecA Machinery gene
  Z042_RS22560 (Z042_18060) pncC 5065303..5065791 (-) 489 WP_024910463.1 nicotinamide-nucleotide amidase -
  Z042_RS22565 (Z042_18055) mltB 5066003..5067079 (-) 1077 WP_024910462.1 lytic murein transglycosylase B -
  Z042_RS22570 (Z042_18050) - 5067417..5068154 (+) 738 WP_024910461.1 carbonic anhydrase -
  Z042_RS22575 (Z042_18045) - 5068237..5069586 (-) 1350 WP_024910460.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38001.46 Da        Isoelectric Point: 4.7628

>NTDB_id=116311 Z042_RS22555 WP_024910464.1 5064126..5065190(-) (recA) [Chania multitudinisentens RB-25]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVIG
SETRVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGKANACNFLKENPAVAAEL
DKKLRDLLLHSNGELVAAIAEDLDDDETETSEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=116311 Z042_RS22555 WP_024910464.1 5064126..5065190(-) (recA) [Chania multitudinisentens RB-25]
ATGGCGATTGATGAGAACAAGCAAAAGGCGTTAGCTGCGGCACTGGGCCAAATTGAAAAACAGTTCGGCAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCCATGGACGTAGAAACGATCTCCACTGGCTCACTGTCACTGGATATTGCCTTGGGGG
CTGGTGGCCTGCCAATGGGCCGTATCGTTGAGATTTATGGTCCTGAATCTTCGGGTAAAACCACTCTCACCCTGCAGGTT
ATCGCCTCCGCCCAGCGTGAAGGTAAAACCTGTGCGTTTATTGACGCCGAGCATGCGTTGGACCCTATCTATGCCAAGAA
ATTGGGTGTTGATATCGACAACCTGCTGTGCTCGCAGCCAGATACCGGAGAGCAGGCACTGGAAATCTGTGATGCCTTGA
CCCGTTCAGGCGCGGTTGATGTGATCATCGTTGACTCCGTGGCTGCGTTGACGCCAAAAGCGGAAATCGAAGGTGAAATC
GGTGATTCACACATGGGGCTGGCAGCGCGCATGATGAGCCAGGCCATGCGTAAACTGGCCGGTAACCTGAAAAATGCCAA
TACATTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGGGTGATGTTTGGGAACCCGGAAACCACGACAGGTGGTA
ACGCCTTGAAGTTCTATGCTTCTGTCCGTTTGGATATCCGCCGTATCGGTGCGATCAAAGAAGGTGACGAAGTTATCGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATTGCAGCGCCATTCAAACAGGCTGAGTTCCAAATTCTGTATGGAGA
AGGTATTAACAGCCGTGGTGAACTGGTCGATCTGGGTGTTAAACACAAAATGATCGAAAAAGCGGGCGCATGGTACAGCT
ACAATGGTGAGAAGATCGGCCAAGGTAAAGCTAATGCCTGTAACTTCTTGAAAGAGAACCCAGCGGTTGCTGCTGAGTTG
GATAAAAAATTGCGTGATTTGTTATTACACAGCAATGGTGAACTGGTTGCCGCTATTGCTGAAGATTTAGATGATGACGA
AACAGAAACTAGCGAAGAATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0LG81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.356

100

0.814
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.356

100

0.814
  recA Pseudomonas stutzeri DSM 10701

72.965

97.175

0.709
  recA Acinetobacter baylyi ADP1

70.605

98.023

0.692
  recA Glaesserella parasuis strain SC1401

69.516

99.153

0.689
  recA Acinetobacter baumannii D1279779

72.34

92.938

0.672
  recA Neisseria gonorrhoeae MS11

68.712

92.09

0.633
  recA Neisseria gonorrhoeae MS11

68.712

92.09

0.633
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.09

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.853

0.619
  recA Helicobacter pylori strain NCTC11637

60.632

98.305

0.596
  recA Helicobacter pylori 26695

60.345

98.305

0.593
  recA Streptococcus pneumoniae R6

59.714

98.87

0.59
  recA Streptococcus pneumoniae Rx1

59.714

98.87

0.59
  recA Streptococcus pneumoniae D39

59.714

98.87

0.59
  recA Streptococcus pneumoniae TIGR4

59.714

98.87

0.59
  recA Streptococcus mitis NCTC 12261

60.294

96.045

0.579
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Streptococcus mutans UA159

62.462

91.808

0.573
  recA Streptococcus mitis SK321

62.848

91.243

0.573
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

61.846

91.808

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.846

91.808

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

61.094

92.938

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.785

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

92.09

0.542

Multiple sequence alignment