Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABGT35_RS07765 Genome accession   NZ_OZ006975
Coordinates   1587197..1588267 (-) Length   356 a.a.
NCBI ID   WP_087477668.1    Uniprot ID   A0A1C5QD25
Organism   MAG: Megasphaera stantonii isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582197..1593267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT35_RS07715 - 1582350..1583066 (-) 717 WP_087477672.1 pseudouridine synthase -
  ABGT35_RS07720 scpB 1583038..1583640 (-) 603 WP_087477737.1 SMC-Scp complex subunit ScpB -
  ABGT35_RS07725 - 1583597..1584325 (-) 729 WP_288945056.1 ScpA family protein -
  ABGT35_RS07755 rny 1585076..1586611 (-) 1536 WP_087477670.1 ribonuclease Y -
  ABGT35_RS07760 - 1586775..1587194 (-) 420 WP_087477669.1 regulatory protein RecX -
  ABGT35_RS07765 recA 1587197..1588267 (-) 1071 WP_087477668.1 recombinase RecA Machinery gene
  ABGT35_RS07770 - 1588279..1589532 (-) 1254 WP_346682671.1 competence/damage-inducible protein A -
  ABGT35_RS07775 rimO 1589549..1590880 (-) 1332 WP_276809553.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ABGT35_RS07780 - 1590881..1591927 (-) 1047 WP_346682672.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38389.87 Da        Isoelectric Point: 4.6948

>NTDB_id=1162670 ABGT35_RS07765 WP_087477668.1 1587197..1588267(-) (recA) [MAG: Megasphaera stantonii isolate]
MDAKQTALENAMRKIEKDFGKGAIMRLGDIADKMNMEVISSGSLAVDLAVGVGGYPRGRVIEIYGPESSGKTTLALHAIA
SAQKSGGIAAFIDAEHALDPVYARHLGVDTAELLISQPDNGEQALEITEELVRSGAVDIIVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLTGIIAKSKAIVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMEIRKGEAIKAGGDVIGNR
ARVKVVKNKVAPPFRNCEFDIMYGTGISREGTILDLGASMDIIEKSGTWYSYKGERLGQGKENVKVFLKEHGDIADEIEQ
IIRDTLAAEPEKFEDVMEEPMQADDLPDTLAETDGE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1162670 ABGT35_RS07765 WP_087477668.1 1587197..1588267(-) (recA) [MAG: Megasphaera stantonii isolate]
ATGGATGCGAAACAAACTGCGCTTGAAAACGCAATGCGCAAGATCGAGAAGGATTTCGGCAAGGGCGCGATCATGCGTCT
CGGCGATATAGCTGACAAGATGAATATGGAAGTCATTTCTTCCGGTTCCCTGGCCGTTGACCTGGCAGTCGGCGTCGGCG
GCTATCCCCGCGGCCGCGTCATCGAAATTTACGGCCCCGAATCGTCCGGTAAGACGACGCTGGCCCTTCACGCCATCGCT
TCGGCCCAAAAGAGCGGCGGCATTGCGGCCTTCATCGACGCGGAACATGCCTTAGACCCGGTCTATGCCCGTCATCTCGG
CGTCGATACGGCGGAGCTGCTCATTTCCCAGCCGGACAACGGCGAGCAGGCTCTGGAAATTACGGAAGAACTGGTGCGCA
GCGGCGCTGTAGACATCATCGTCGTCGACTCCGTAGCCGCCCTGGTGCCGAAGGCGGAAATCGAAGGGGAAATGGGCGAT
TCCCACGTCGGCCTGCAGGCCCGCCTCATGAGCCAGGCCCTGCGTAAGCTGACCGGCATTATCGCTAAATCGAAGGCCAT
CGTCATCTTTATCAACCAGCTCCGTGAAAAGGTCGGCGTCATGTTCGGCAACCCCGAAACGACGACGGGCGGCCGGGCCC
TGAAATTCTACGCCTCTATCCGCATGGAAATCCGCAAGGGCGAAGCCATTAAGGCCGGCGGCGACGTCATCGGCAACCGG
GCCCGGGTTAAGGTCGTAAAAAATAAAGTCGCGCCGCCGTTCCGAAACTGCGAATTCGACATCATGTACGGCACGGGTAT
TTCCCGCGAAGGGACGATTCTCGATTTGGGCGCGTCCATGGACATCATCGAAAAGAGCGGCACCTGGTATTCGTATAAGG
GCGAACGGCTGGGCCAGGGCAAGGAAAACGTCAAGGTATTCCTGAAAGAGCACGGCGACATTGCCGACGAAATTGAACAG
ATTATCCGCGATACCTTAGCCGCCGAGCCGGAAAAATTTGAAGACGTGATGGAAGAACCGATGCAGGCCGACGACTTGCC
CGACACGCTGGCAGAAACTGACGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C5QD25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.679

91.011

0.643
  recA Latilactobacillus sakei subsp. sakei 23K

63.636

98.876

0.629
  recA Streptococcus pneumoniae D39

60.326

100

0.624
  recA Streptococcus pneumoniae TIGR4

60.326

100

0.624
  recA Streptococcus pneumoniae R6

60.326

100

0.624
  recA Streptococcus pneumoniae Rx1

60.326

100

0.624
  recA Neisseria gonorrhoeae MS11

66.77

90.449

0.604
  recA Neisseria gonorrhoeae strain FA1090

66.77

90.449

0.604
  recA Neisseria gonorrhoeae MS11

66.77

90.449

0.604
  recA Glaesserella parasuis strain SC1401

65.046

92.416

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

93.539

0.593
  recA Vibrio cholerae strain A1552

61.224

96.348

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.224

96.348

0.59
  recA Pseudomonas stutzeri DSM 10701

64.706

90.73

0.587
  recA Streptococcus pyogenes NZ131

64.11

91.573

0.587
  recA Streptococcus mitis NCTC 12261

64.198

91.011

0.584
  recA Ralstonia pseudosolanacearum GMI1000

65.823

88.764

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.918

92.416

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.727

92.697

0.581
  recA Helicobacter pylori strain NCTC11637

60.588

95.506

0.579
  recA Streptococcus mitis SK321

63.58

91.011

0.579
  recA Helicobacter pylori 26695

60.294

95.506

0.576
  recA Streptococcus mutans UA159

62.577

91.573

0.573
  recA Acinetobacter baumannii D1279779

62.848

90.73

0.57
  recA Lactococcus lactis subsp. cremoris KW2

62.654

91.011

0.57
  recA Acinetobacter baylyi ADP1

62.154

91.292

0.567

Multiple sequence alignment