Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U9974_RS07200 Genome accession   NZ_OY986433
Coordinates   1327892..1329091 (-) Length   399 a.a.
NCBI ID   WP_006173361.1    Uniprot ID   A3YUM4
Organism   Synechococcus sp. CBW1107 isolate KAC_106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1322892..1334091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9974_RS07175 (ICNINCKA_01430) crtD 1323183..1324736 (+) 1554 WP_322775661.1 C-3',4' desaturase CrtD -
  U9974_RS07180 (ICNINCKA_01431) - 1324733..1325614 (-) 882 WP_255142093.1 prephenate/arogenate dehydrogenase -
  U9974_RS07185 (ICNINCKA_01432) - 1325657..1327090 (+) 1434 WP_322775662.1 helicase -
  U9974_RS07190 (ICNINCKA_01433) - 1327161..1327406 (+) 246 WP_006173363.1 DUF2839 domain-containing protein -
  U9974_RS07195 (ICNINCKA_01434) - 1327494..1327874 (+) 381 WP_006173362.1 DUF1815 family protein -
  U9974_RS07200 (ICNINCKA_01435) recA 1327892..1329091 (-) 1200 WP_006173361.1 recombinase RecA Machinery gene
  U9974_RS07205 - 1329271..1330020 (-) 750 WP_322775663.1 HAD family hydrolase -
  U9974_RS07215 (ICNINCKA_01437) - 1330267..1331961 (-) 1695 WP_322775664.1 AAA family ATPase -
  U9974_RS07220 (ICNINCKA_01438) - 1331988..1333043 (-) 1056 WP_322775665.1 LdpA C-terminal domain-containing domain -
  U9974_RS07225 (ICNINCKA_01439) - 1333033..1333494 (-) 462 WP_006173357.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 41950.45 Da        Isoelectric Point: 5.6061

>NTDB_id=1162504 U9974_RS07200 WP_006173361.1 1327892..1329091(-) (recA) [Synechococcus sp. CBW1107 isolate KAC_106]
MPADSKSTDLRAAQPRSSSGTAAGAAERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETMPTGALTLDLALGGGYPKG
RVVEVYGPESSGKTTLTLHAIAEAQRRGGVAAFVDAEHALDPVYAAALGVDVENLLVSQPDTGEMALEIVDQLVRSAAVD
IVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYA
SVRLDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCVIDLAEETGVVIRKGAWYSYGGDNIG
QGRDNTINWLEQNPEQKEQIEAEVRRRLTEGADVTANSLKPLAAAAAKLAATSSAASSASESSESALDSGATALESAAS

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=1162504 U9974_RS07200 WP_006173361.1 1327892..1329091(-) (recA) [Synechococcus sp. CBW1107 isolate KAC_106]
ATGCCTGCCGACTCCAAGAGCACCGACCTCAGGGCTGCCCAGCCCCGCTCCTCGAGCGGGACGGCAGCCGGGGCGGCCGA
GCGCGACAAGGCTCTCAACCTCGTCCTCGGCCAGATCGAGCGCAACTTCGGCAAGGGCTCGATCATGCGCCTGGGGGATG
CCTCCCGGATGCGGGTGGAAACGATGCCCACCGGTGCCCTCACCCTGGATCTGGCCCTCGGCGGCGGGTATCCCAAGGGC
CGGGTGGTGGAGGTCTACGGGCCGGAGAGTTCCGGCAAGACCACCCTCACTCTCCATGCCATCGCCGAAGCGCAGCGCCG
CGGTGGTGTGGCCGCCTTCGTGGATGCCGAGCATGCGCTCGATCCGGTCTACGCCGCGGCTCTGGGGGTCGATGTGGAGA
ACCTGCTGGTCTCTCAGCCCGACACCGGTGAAATGGCCCTGGAGATCGTCGATCAGCTGGTGCGGTCCGCCGCGGTCGAC
ATCGTCGTGGTCGACTCGGTGGCAGCCCTGACTCCCCGTGCCGAGATCGAGGGGGAGATGGGGGACCTGGCGGTGGGCAG
CCAGGCACGGCTGATGAGCCAGGCGATGCGCAAGATCACTGGCAACATCGGCAAGTCGGGCTGCACGGTGATCTTCCTCA
ACCAGCTGCGCCAGAAGATCGGCGTCACCTACGGCAATCCCGAAACCACCACCGGCGGCAACGCCCTCAAGTTTTACGCC
TCGGTGCGGCTCGACATCCGCCGCATTCAGACCCTCAAGCGCGGCACGGAGGAATACGGCATTCGCGCCAAGGTGAAGGT
GGCGAAGAACAAGGTGGCGCCCCCGTTCCGCATCGCTGAGTTCGACATCCTTTTCGGTCGTGGTATCAGCACACTGGGCT
GTGTGATCGACCTGGCCGAGGAGACCGGTGTGGTGATCCGCAAAGGTGCCTGGTACAGCTACGGCGGCGACAACATCGGT
CAGGGCCGCGACAACACGATCAACTGGCTGGAGCAGAACCCCGAGCAGAAGGAGCAGATCGAGGCCGAGGTTCGGCGGAG
GCTCACTGAGGGAGCTGATGTGACGGCCAATTCGCTCAAACCACTGGCAGCGGCTGCCGCCAAACTGGCCGCCACCAGCT
CCGCCGCTTCGTCGGCATCGGAATCGAGTGAATCAGCGCTGGACTCCGGGGCTACCGCTCTGGAATCTGCCGCTAGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(30-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3YUM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.35

82.957

0.534
  recA Pseudomonas stutzeri DSM 10701

64.596

80.702

0.521
  recA Acinetobacter baumannii D1279779

63.665

80.702

0.514
  recA Ralstonia pseudosolanacearum GMI1000

64.952

77.945

0.506
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

80.702

0.501
  recA Vibrio cholerae strain A1552

62.112

80.702

0.501
  recA Neisseria gonorrhoeae MS11

59.94

83.208

0.499
  recA Neisseria gonorrhoeae MS11

59.94

83.208

0.499
  recA Neisseria gonorrhoeae strain FA1090

59.94

83.208

0.499
  recA Glaesserella parasuis strain SC1401

61.3

80.952

0.496
  recA Bacillus subtilis subsp. subtilis str. 168

60.991

80.952

0.494
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

82.456

0.489
  recA Streptococcus mitis NCTC 12261

56.358

86.717

0.489
  recA Helicobacter pylori 26695

57.396

84.712

0.486
  recA Helicobacter pylori strain NCTC11637

57.396

84.712

0.486
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.502

80.451

0.479
  recA Streptococcus pneumoniae R6

56.38

84.461

0.476
  recA Streptococcus pneumoniae TIGR4

56.38

84.461

0.476
  recA Streptococcus pneumoniae D39

56.38

84.461

0.476
  recA Streptococcus pneumoniae Rx1

56.38

84.461

0.476
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

80.201

0.474
  recA Streptococcus mitis SK321

57.317

82.206

0.471
  recA Streptococcus mutans UA159

57.846

81.454

0.471
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.362

81.704

0.469
  recA Lactococcus lactis subsp. cremoris KW2

56.308

81.454

0.459
  recA Streptococcus pyogenes NZ131

55.657

81.955

0.456

Multiple sequence alignment