Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U9971_RS12985 Genome accession   NZ_OY986430
Coordinates   2409131..2410267 (-) Length   378 a.a.
NCBI ID   WP_322771999.1    Uniprot ID   -
Organism   Synechococcus sp. CBW1107 isolate KAC_114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2404131..2415267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9971_RS12960 (MNNICLKF_02615) crtD 2404457..2405959 (+) 1503 WP_322771995.1 C-3',4' desaturase CrtD -
  U9971_RS12965 (MNNICLKF_02616) - 2405969..2406859 (-) 891 WP_322771996.1 prephenate/arogenate dehydrogenase -
  U9971_RS12970 (MNNICLKF_02617) - 2406901..2408334 (+) 1434 WP_322773734.1 helicase -
  U9971_RS12975 (MNNICLKF_02618) - 2408371..2408616 (+) 246 WP_322771997.1 DUF2839 domain-containing protein -
  U9971_RS12980 (MNNICLKF_02619) - 2408732..2409070 (+) 339 WP_322771998.1 DUF1815 family protein -
  U9971_RS12985 (MNNICLKF_02620) recA 2409131..2410267 (-) 1137 WP_322771999.1 recombinase RecA Machinery gene
  U9971_RS12990 (MNNICLKF_02621) - 2410424..2411176 (-) 753 WP_322772000.1 HAD family hydrolase -
  U9971_RS13000 (MNNICLKF_02623) - 2411376..2413025 (-) 1650 WP_322772001.1 AAA family ATPase -
  U9971_RS13005 (MNNICLKF_02624) - 2413081..2414112 (-) 1032 WP_322772002.1 LdpA C-terminal domain-containing domain -
  U9971_RS13010 (MNNICLKF_02625) - 2414109..2414576 (-) 468 WP_322772003.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40081.50 Da        Isoelectric Point: 5.9881

>NTDB_id=1162478 U9971_RS12985 WP_322771999.1 2409131..2410267(-) (recA) [Synechococcus sp. CBW1107 isolate KAC_114]
MPADTKTSAASNGSSPSSNSPERDKALGLVLNQIERNFGKGSIMRLGDASRMRIETSPTGALTLDLALGGGYPKGRVVEI
YGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVD
SVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEENGVVVRKGAWYSYEGDNIGQGRDN
TITWLEQNPEPKEKIERQVREKLSETSDSLKPVAAAAARLAATGSAVAASEEAVPAAS

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1162478 U9971_RS12985 WP_322771999.1 2409131..2410267(-) (recA) [Synechococcus sp. CBW1107 isolate KAC_114]
ATGCCCGCCGACACCAAAACCAGCGCCGCCAGCAACGGCAGCAGCCCAAGCAGTAATAGCCCCGAGCGCGATAAGGCCCT
GGGCCTGGTGCTCAACCAGATCGAGCGCAACTTCGGCAAGGGCTCGATCATGCGGCTGGGCGACGCATCGCGGATGCGCA
TCGAAACCAGCCCCACCGGCGCCCTCACCCTCGATCTAGCCCTGGGCGGCGGCTATCCCAAAGGCCGTGTCGTAGAGATC
TACGGCCCGGAGAGCTCCGGTAAAACCACGCTCACCCTGCACGCCATCGCCGAGGTGCAACGGCGCGGGGGCGTGGCCGC
CTTCGTCGACGCGGAGCACGCCCTCGATCCGGTGTACGCCGCAGCCCTGGGCGTCGACATCGAAAACCTACTGGTCTCCC
AACCCGACACCGGCGAGATGGCGCTGGAGATCGTGGATCAGCTGGTGCGCTCCGCCGCCGTTGACATCGTGGTGGTTGAC
TCGGTGGCCGCCCTCACCCCCCGCGCAGAAATCGAAGGCGAGATGGGCGATCTCGCCGTGGGTAGCCAGGCCCGCCTGAT
GAGCCAGGCCATGCGCAAGATCACCGGCAACATCGGCAAATCCGGTTGCACCGTGATCTTCCTCAACCAGCTGCGCCAGA
AGATCGGCGTGACCTACGGCAACCCCGAAACCACCACCGGTGGTAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTCGAC
ATCCGCCGCATCCAAACCCTCAAGCGCGGCACCGAGGAATACGGCATCCGCGCCAAGGTGAAGGTGGCCAAAAACAAGGT
GGCACCCCCCTTCCGCATCGCCGAATTCGACATCCTGTTCGGCCGCGGCATCAGCACCGTGGGCTGCCTGTTGGATCTAG
CCGAAGAAAACGGCGTGGTGGTGCGCAAAGGGGCTTGGTACAGCTACGAGGGCGACAACATCGGTCAGGGCCGCGACAAC
ACGATCACCTGGCTGGAGCAGAACCCCGAGCCGAAAGAGAAGATCGAGCGGCAAGTGCGCGAGAAGCTCAGCGAAACGAG
CGATTCGCTCAAGCCTGTGGCCGCGGCCGCGGCTCGCCTGGCCGCCACTGGATCGGCGGTCGCCGCCAGCGAGGAAGCAG
TGCCCGCAGCCAGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

63.881

88.624

0.566
  recA Ralstonia pseudosolanacearum GMI1000

62.798

88.889

0.558
  recA Acinetobacter baylyi ADP1

65.217

85.185

0.556
  recA Acinetobacter baumannii D1279779

64.308

85.979

0.553
  recA Glaesserella parasuis strain SC1401

58.592

93.915

0.55
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

84.921

0.532
  recA Neisseria gonorrhoeae MS11

61.92

85.45

0.529
  recA Neisseria gonorrhoeae MS11

61.92

85.45

0.529
  recA Neisseria gonorrhoeae strain FA1090

61.92

85.45

0.529
  recA Vibrio cholerae strain A1552

62.112

85.185

0.529
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

85.185

0.529
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.88

88.36

0.529
  recA Helicobacter pylori strain NCTC11637

59.877

85.714

0.513
  recA Helicobacter pylori 26695

59.877

85.714

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.125

84.921

0.511
  recA Streptococcus pneumoniae Rx1

57.927

86.772

0.503
  recA Streptococcus pneumoniae D39

57.927

86.772

0.503
  recA Streptococcus pneumoniae R6

57.927

86.772

0.503
  recA Streptococcus pneumoniae TIGR4

57.927

86.772

0.503
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.656

0.503
  recA Streptococcus mitis NCTC 12261

58.025

85.714

0.497
  recA Streptococcus mitis SK321

58.025

85.714

0.497
  recA Streptococcus mutans UA159

57.846

85.979

0.497
  recA Lactococcus lactis subsp. cremoris KW2

57.099

85.714

0.489
  recA Streptococcus pyogenes NZ131

56.269

86.508

0.487
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.963

86.508

0.484

Multiple sequence alignment