Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U4992_RS11885 Genome accession   NZ_OY843610
Coordinates   2727349..2728356 (-) Length   335 a.a.
NCBI ID   WP_058105109.1    Uniprot ID   -
Organism   Maribacter dokdonensis isolate 44847     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2722349..2733356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4992_RS11860 trpS 2722939..2723907 (-) 969 WP_071340865.1 tryptophan--tRNA ligase -
  U4992_RS11865 - 2723977..2724717 (+) 741 WP_321826137.1 lysophospholipid acyltransferase family protein -
  U4992_RS11870 - 2724714..2726228 (-) 1515 WP_321826138.1 outer membrane beta-barrel protein -
  U4992_RS11875 - 2726261..2726827 (-) 567 WP_071340869.1 RNA polymerase sigma factor -
  U4992_RS11880 - 2726844..2727266 (-) 423 WP_321826139.1 hypothetical protein -
  U4992_RS11885 recA 2727349..2728356 (-) 1008 WP_058105109.1 recombinase RecA Machinery gene
  U4992_RS11890 - 2728727..2729758 (+) 1032 WP_074670953.1 rhodanese-related sulfurtransferase -
  U4992_RS11895 - 2730000..2731196 (+) 1197 WP_091607810.1 regulatory iron-sulfur-containing complex subunit RicT -
  U4992_RS11900 - 2731189..2731674 (+) 486 WP_321826140.1 gliding motility lipoprotein GldH -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36144.37 Da        Isoelectric Point: 5.5465

>NTDB_id=1162108 U4992_RS11885 WP_058105109.1 2727349..2728356(-) (recA) [Maribacter dokdonensis isolate 44847]
MSSEKEAKLKALKLTLDKMDKTYGKGAVMKMGDSVVADVEVIPSGSLGLDIALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKNGGIAAFIDAEHAFDRFYAQKLGVDIDNLIISQPDNGEQALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTGSISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGNV
QGNKTRVKVVKNKVAPPFRTTEFDIMYGEGISKVGEVIDLGVEYEIVKKSGSWFSYGDTKLGQGRDAVKNLLLDNPELFE
ELDGKIREAIAALNA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1162108 U4992_RS11885 WP_058105109.1 2727349..2728356(-) (recA) [Maribacter dokdonensis isolate 44847]
ATGAGTTCTGAAAAAGAAGCAAAATTAAAAGCATTAAAGTTGACCCTTGACAAAATGGATAAGACCTATGGAAAGGGCGC
TGTAATGAAAATGGGGGATAGTGTTGTTGCAGATGTTGAAGTGATTCCTTCTGGCTCATTAGGTTTAGATATTGCCTTAG
GTGTAGGCGGTTACCCAAGAGGTAGGGTAATTGAAATTTACGGACCGGAATCTTCTGGTAAAACCACCTTGACCCTACAT
GCCATTGCCGAGGCTCAAAAAAATGGAGGTATTGCGGCATTTATTGATGCAGAACATGCCTTTGACCGTTTTTACGCTCA
AAAATTAGGGGTAGATATTGACAATTTAATTATTTCTCAACCAGATAATGGGGAGCAAGCACTAGAAATTGCAGACAATC
TAATACGTTCTGGGGCTATTGATATTGTTGTTGTGGATTCAGTTGCGGCATTAACCCCAAAAAGTGAGATCGAAGGTGAA
ATGGGTGACTCTAAAATGGGGCTTCATGCACGTTTAATGTCTCAAGCGCTTAGAAAACTTACCGGTTCTATCAGCAAAAC
AAATTGTACAGTAATTTTCATTAACCAATTACGTGAAAAAATTGGTGTTATGTTCGGTAACCCAGAAACCACTACTGGTG
GTAACGCTCTTAAATTTTATGCTTCCGTTCGTTTAGATATTAGAAGATCTACTCAAATAAAAGATACCGATGGTAACGTA
CAAGGAAACAAAACAAGAGTTAAAGTTGTAAAGAACAAGGTTGCACCACCTTTCCGTACTACAGAGTTTGATATTATGTA
TGGCGAAGGTATTTCTAAAGTTGGCGAGGTAATAGACCTAGGTGTTGAATATGAAATAGTAAAAAAGAGTGGTTCTTGGT
TTAGCTATGGCGACACAAAATTAGGTCAAGGTCGTGATGCGGTTAAAAACCTATTATTGGATAATCCTGAATTATTTGAG
GAATTAGATGGTAAGATCAGAGAAGCCATTGCAGCCTTAAATGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

75.595

100

0.758
  recA Ralstonia pseudosolanacearum GMI1000

67.949

93.134

0.633
  recA Neisseria gonorrhoeae MS11

67.846

92.836

0.63
  recA Neisseria gonorrhoeae MS11

67.846

92.836

0.63
  recA Neisseria gonorrhoeae strain FA1090

67.846

92.836

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

66.038

94.925

0.627
  recA Acinetobacter baumannii D1279779

64.615

97.015

0.627
  recA Glaesserella parasuis strain SC1401

63.526

98.209

0.624
  recA Acinetobacter baylyi ADP1

64.706

96.418

0.624
  recA Helicobacter pylori strain NCTC11637

63.415

97.91

0.621
  recA Helicobacter pylori 26695

63.415

97.91

0.621
  recA Streptococcus mitis NCTC 12261

63.665

96.119

0.612
  recA Streptococcus mitis SK321

63.665

96.119

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.077

97.015

0.612
  recA Vibrio cholerae strain A1552

63.077

97.015

0.612
  recA Pseudomonas stutzeri DSM 10701

62.121

98.507

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.963

96.716

0.609
  recA Streptococcus pyogenes NZ131

62.346

96.716

0.603
  recA Streptococcus pneumoniae Rx1

62.422

96.119

0.6
  recA Streptococcus pneumoniae D39

62.422

96.119

0.6
  recA Streptococcus pneumoniae R6

62.422

96.119

0.6
  recA Streptococcus pneumoniae TIGR4

62.422

96.119

0.6
  recA Latilactobacillus sakei subsp. sakei 23K

61.656

97.313

0.6
  recA Lactococcus lactis subsp. cremoris KW2

60.671

97.91

0.594
  recA Streptococcus mutans UA159

61.491

96.119

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.923

97.015

0.552

Multiple sequence alignment