Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U9J37_RS09300 Genome accession   NZ_OY808997
Coordinates   2052858..2053904 (-) Length   348 a.a.
NCBI ID   WP_038140340.1    Uniprot ID   A0A0A5HQV4
Organism   Vibrio sp. 16 isolate VDT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2047858..2058904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS09280 (VDT1_1889) csrA 2047924..2048121 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  U9J37_RS09285 (VDT1_1890) - 2048214..2049401 (-) 1188 WP_322413804.1 aspartate kinase -
  U9J37_RS09290 (VDT1_1891) alaS 2049595..2052177 (-) 2583 WP_005472649.1 alanine--tRNA ligase -
  U9J37_RS09295 (VDT1_1892) recX 2052320..2052784 (-) 465 WP_005472727.1 recombination regulator RecX -
  U9J37_RS09300 (VDT1_1893) recA 2052858..2053904 (-) 1047 WP_038140340.1 recombinase RecA Machinery gene
  U9J37_RS09305 (VDT1_1894) pncC 2054093..2054587 (-) 495 WP_005472739.1 nicotinamide-nucleotide amidase -
  U9J37_RS09310 (VDT1_1895) mutS 2054714..2057251 (+) 2538 WP_043887036.1 DNA mismatch repair protein MutS -
  U9J37_RS09315 (VDT1_1896) lptG 2057290..2058360 (-) 1071 WP_005472677.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37451.97 Da        Isoelectric Point: 4.9554

>NTDB_id=1161975 U9J37_RS09300 WP_038140340.1 2052858..2053904(-) (recA) [Vibrio sp. 16 isolate VDT1]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIA
AAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANAGKFLRENVEAAQAIDA
KLREMLLSPAEIQPDDAELGQMPEQEEL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1161975 U9J37_RS09300 WP_038140340.1 2052858..2053904(-) (recA) [Vibrio sp. 16 isolate VDT1]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAGATTGAAAAGCAATTCGGTAAAGGTTCAATCATGCG
CCTGGGTGATAACCGCGCAATGGATGTAGAAACAATCTCTACGGGTTCACTTTCTCTTGATATCGCACTGGGTGCTGGTG
GCCTTCCGATGGGTCGTATCGTAGAAATCTACGGTCCTGAATCATCGGGTAAAACAACGCTAACTCTTGAGTGTATCGCT
GCGGCACAAAAACAAGGTAAAACTTGTGCATTTATCGATGCAGAGCACGCACTTGATCCTGTTTACGCGAAGAAGCTTGG
TGTTGATATTGATGCACTTCTTGTTTCTCAGCCAGACACTGGTGAGCAAGCGCTTGAAATCTGTGATGCGTTGGCACGTT
CTGGTGCTATCGACGTAATGGTTGTTGACTCGGTTGCAGCTCTAACGCCTAAAGCGGAAATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCGCGTATGCTTTCTCAAGCAATGCGTAAGCTAACTGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACCACAACGGGTGGTAATGCAC
TTAAGTTTTACGCATCGGTTCGCCTAGATATTCGCCGTACGGGGTCTATCAAAGAAGGCGATGAGGTTGTGGGTAACGAG
ACTCGCATCAAAGTAGTTAAGAACAAGATTGCAGCACCATTTAAGCAAGCTGAAACGCAAATCATGTATGGCCAAGGTTT
CAACCGTGAAGGTGAACTGATTGACTTAGGCGTTAAGCATAAGCTAATCGAAAAAGCGGGCGCATGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCAGGCAAGTTTCTACGAGAAAACGTAGAGGCGGCACAAGCTATCGACGCT
AAGCTACGTGAAATGCTTCTGTCGCCAGCAGAAATTCAGCCTGATGACGCAGAATTAGGCCAAATGCCTGAGCAAGAAGA
GCTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A5HQV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

88.102

100

0.894
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.102

100

0.894
  recA Acinetobacter baumannii D1279779

72.141

97.989

0.707
  recA Pseudomonas stutzeri DSM 10701

74.924

93.966

0.704
  recA Acinetobacter baylyi ADP1

73.273

95.69

0.701
  recA Glaesserella parasuis strain SC1401

70.859

93.678

0.664
  recA Neisseria gonorrhoeae MS11

70.245

93.678

0.658
  recA Neisseria gonorrhoeae MS11

70.245

93.678

0.658
  recA Neisseria gonorrhoeae strain FA1090

70.245

93.678

0.658
  recA Ralstonia pseudosolanacearum GMI1000

72.026

89.368

0.644
  recA Streptococcus pneumoniae TIGR4

59.143

100

0.595
  recA Streptococcus pneumoniae Rx1

59.143

100

0.595
  recA Streptococcus pneumoniae D39

59.143

100

0.595
  recA Streptococcus pneumoniae R6

59.143

100

0.595
  recA Helicobacter pylori 26695

61.791

96.264

0.595
  recA Helicobacter pylori strain NCTC11637

61.493

96.264

0.592
  recA Streptococcus mutans UA159

58.739

100

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.263

91.667

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

92.241

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.115

0.575
  recA Streptococcus mitis NCTC 12261

61.61

92.816

0.572
  recA Streptococcus mitis SK321

61.61

92.816

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.461

91.092

0.569
  recA Streptococcus pyogenes NZ131

60.923

93.391

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.982

95.977

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

92.241

0.563

Multiple sequence alignment