Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | R2K04_RS06870 | Genome accession | NZ_OY731254 |
| Coordinates | 1427587..1428633 (+) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain L-TCD-01 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1401539..1466373 | 1427587..1428633 | within | 0 |
Gene organization within MGE regions
Location: 1401539..1466373
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2K04_RS06755 | rimP | 1403955..1404416 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| R2K04_RS06760 | nusA | 1404446..1405600 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| R2K04_RS06765 | rnpM | 1405607..1405888 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| R2K04_RS06770 | - | 1405878..1406189 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| R2K04_RS06775 | infB | 1406211..1408151 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| R2K04_RS06780 | rbfA | 1408194..1408574 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| R2K04_RS06785 | - | 1408555..1409232 (+) | 678 | Protein_1248 | DHH family phosphoesterase | - |
| R2K04_RS06790 | tnpB | 1409872..1410990 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| R2K04_RS06795 | - | 1411108..1411413 (+) | 306 | Protein_1250 | DHH family phosphoesterase | - |
| R2K04_RS06800 | truB | 1411426..1412331 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| R2K04_RS06805 | - | 1412462..1413391 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| R2K04_RS06810 | rpsO | 1413495..1413752 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| R2K04_RS06815 | - | 1413992..1414837 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| R2K04_RS06820 | pnp | 1414962..1417073 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| R2K04_RS06825 | - | 1417339..1418082 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| R2K04_RS06830 | - | 1418240..1419487 (+) | 1248 | WP_009902409.1 | M16 family metallopeptidase | - |
| R2K04_RS06835 | - | 1419522..1419767 (+) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| R2K04_RS06840 | dapG | 1419777..1421000 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| R2K04_RS06845 | - | 1421113..1421847 (+) | 735 | WP_021364422.1 | ClpP family protease | - |
| R2K04_RS06850 | - | 1421970..1424381 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| R2K04_RS06855 | mnmH | 1424384..1425442 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| R2K04_RS06860 | rimO | 1425436..1426770 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| R2K04_RS06865 | pgsA | 1426757..1427299 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| R2K04_RS06870 | recA | 1427587..1428633 (+) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| R2K04_RS06875 | rny | 1428809..1430350 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| R2K04_RS06880 | - | 1430985..1432766 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| R2K04_RS06885 | lepB | 1432848..1433378 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| R2K04_RS06890 | - | 1433418..1434242 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| R2K04_RS06895 | - | 1434499..1435407 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| R2K04_RS06900 | purB | 1435551..1436996 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| R2K04_RS06905 | - | 1437307..1437759 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| R2K04_RS06910 | - | 1438171..1439748 (+) | 1578 | WP_021364419.1 | PTS transporter subunit EIIC | - |
| R2K04_RS06915 | - | 1439896..1440648 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| R2K04_RS06920 | - | 1440781..1442127 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| R2K04_RS06925 | - | 1442239..1443435 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| R2K04_RS06930 | galT | 1443820..1444770 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| R2K04_RS06935 | - | 1444931..1445683 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| R2K04_RS06940 | - | 1445775..1446551 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| R2K04_RS06945 | - | 1446866..1448764 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| R2K04_RS06950 | - | 1448892..1450013 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| R2K04_RS06955 | - | 1450212..1450544 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| R2K04_RS06960 | - | 1450531..1451589 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| R2K04_RS06965 | - | 1451582..1452652 (+) | 1071 | WP_021364425.1 | DUF4097 family beta strand repeat-containing protein | - |
| R2K04_RS06970 | - | 1452754..1453290 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| R2K04_RS06975 | - | 1453406..1454113 (+) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| R2K04_RS06980 | - | 1454115..1454831 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| R2K04_RS06985 | - | 1454833..1455591 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| R2K04_RS06990 | - | 1455726..1457114 (+) | 1389 | WP_021364432.1 | two-component system sensor histidine kinase | - |
| R2K04_RS06995 | - | 1457190..1458011 (-) | 822 | WP_021364435.1 | pyridoxamine kinase | - |
| R2K04_RS07000 | - | 1458262..1459416 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| R2K04_RS07005 | - | 1459599..1459799 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| R2K04_RS07010 | - | 1460220..1460648 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| R2K04_RS07015 | - | 1460791..1461546 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| R2K04_RS07020 | - | 1462247..1462753 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| R2K04_RS07025 | - | 1462835..1463155 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| R2K04_RS07030 | - | 1463324..1463521 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| R2K04_RS07035 | - | 1463626..1464066 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| R2K04_RS07040 | - | 1464315..1464758 (+) | 444 | WP_003438413.1 | phage tail terminator family protein | - |
| R2K04_RS07045 | - | 1464763..1465827 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| R2K04_RS07050 | - | 1465841..1466269 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=1160734 R2K04_RS06870 WP_021364420.1 1427587..1428633(+) (recA) [Clostridioides difficile strain L-TCD-01]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=1160734 R2K04_RS06870 WP_021364420.1 1427587..1428633(+) (recA) [Clostridioides difficile strain L-TCD-01]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.