Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RCP16_RS09745 Genome accession   NZ_OY725677
Coordinates   2247424..2248491 (-) Length   355 a.a.
NCBI ID   WP_069327319.1    Uniprot ID   A0A1E3L6J9
Organism   Paenibacillus nuruki strain AASFL403 isolate AASFL403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2242424..2253491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCP16_RS09715 (AASFL403_09790) pduL 2242475..2243047 (-) 573 WP_069327317.1 phosphate propanoyltransferase -
  RCP16_RS09720 (AASFL403_09795) - 2243326..2243586 (-) 261 WP_017813748.1 stage V sporulation protein S -
  RCP16_RS09725 (AASFL403_09800) - 2243744..2244538 (-) 795 WP_153226900.1 TIGR00282 family metallophosphoesterase -
  RCP16_RS09730 (AASFL403_09805) rny 2244604..2246145 (-) 1542 WP_069327318.1 ribonuclease Y -
  RCP16_RS09735 - 2246513..2246608 (-) 96 Protein_1890 regulatory protein RecX -
  RCP16_RS09740 (AASFL403_09810) - 2246593..2247279 (-) 687 WP_308642313.1 regulatory protein RecX -
  RCP16_RS09745 (AASFL403_09815) recA 2247424..2248491 (-) 1068 WP_069327319.1 recombinase RecA Machinery gene
  RCP16_RS09750 (AASFL403_09820) - 2248808..2250079 (-) 1272 WP_069327320.1 competence/damage-inducible protein A -
  RCP16_RS09755 (AASFL403_09825) pgsA 2250250..2250837 (-) 588 WP_069327321.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RCP16_RS09760 (AASFL403_09830) - 2250966..2251454 (-) 489 WP_069327322.1 YajQ family cyclic di-GMP-binding protein -
  RCP16_RS09765 (AASFL403_09835) - 2251583..2252629 (-) 1047 WP_308642314.1 helix-turn-helix domain-containing protein -
  RCP16_RS09770 (AASFL403_09840) - 2252666..2253433 (-) 768 WP_069327324.1 DUF3388 domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38534.89 Da        Isoelectric Point: 5.2184

>NTDB_id=1160633 RCP16_RS09745 WP_069327319.1 2247424..2248491(-) (recA) [Paenibacillus nuruki strain AASFL403 isolate AASFL403]
MSDRRAALDMALRQIEKQFGKGSVMKLGESTHMQVEVIPSGSIALDIALGTGGMPRGRIIEIYGPESSGKTTVALHAIAE
VQKAGGQAAFIDAEHALDPQYAKNLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTITIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIEAIKNGNDVVGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISKEGSLIDIGVEHDIVNKSGAWYSYEGERMGQGRENSKQFLKENPHIADIIEQK
IRVSSNLTTVVEEPSAEEKEKESLEEQELFSKATE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1160633 RCP16_RS09745 WP_069327319.1 2247424..2248491(-) (recA) [Paenibacillus nuruki strain AASFL403 isolate AASFL403]
TTGTCAGATCGTCGTGCAGCGTTAGATATGGCGCTTCGTCAAATAGAGAAGCAATTTGGTAAAGGTTCGGTTATGAAACT
TGGAGAATCCACTCATATGCAAGTTGAAGTTATTCCTAGTGGATCTATTGCTTTAGATATTGCTTTGGGAACAGGCGGTA
TGCCAAGAGGACGTATTATCGAAATATACGGACCAGAATCTTCAGGTAAAACAACAGTAGCGCTTCATGCTATTGCTGAA
GTTCAAAAAGCTGGAGGACAAGCAGCATTTATTGATGCAGAGCATGCTTTGGATCCTCAATATGCTAAAAACTTGGGTGT
TAATATTGATGAGCTATTATTATCTCAACCAGATACAGGTGAGCAAGGTCTAGAGATCGCGGAAGCTCTTGTACGTAGTG
GCGCTGTAGATATTATTGTTATCGATTCTGTAGCAGCATTGGTACCAAAAGCAGAGATCGAAGGCGAAATGGGTGACTCT
CACGTTGGTTTGCAAGCACGTTTGATGTCTCAAGCATTGCGTAAATTGTCTGGTGCAATCAGCAAATCCAAAACAATCAC
GATCTTTATCAATCAGCTTCGTGAAAAAGTTGGCGTTATGTTTGGTAACCCTGAGACAACTCCTGGTGGTCGTGCACTTA
AATTCTACTCTACTGTACGTCTAGACGTGCGTCGTATTGAAGCAATCAAAAACGGTAACGATGTTGTCGGTAACCGTACA
CGTATCAAAGTTGTTAAAAACAAAGTGGCTCCTCCATTCAAACAAGCTGAAGTGGATATCATGTACGGAGAAGGTATCTC
CAAAGAAGGTAGCTTGATCGATATTGGTGTAGAACACGATATTGTTAACAAAAGTGGTGCTTGGTACTCTTACGAAGGTG
AGCGTATGGGTCAAGGTCGCGAGAACTCTAAGCAGTTTTTGAAAGAAAACCCACACATTGCAGATATCATTGAACAAAAA
ATTCGTGTATCTAGCAATTTAACAACAGTGGTTGAAGAACCATCAGCTGAAGAAAAAGAAAAAGAAAGTCTTGAAGAGCA
AGAATTATTCTCTAAAGCAACTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3L6J9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.988

90.704

0.744
  recA Latilactobacillus sakei subsp. sakei 23K

71.765

95.775

0.687
  recA Streptococcus mutans UA159

66.761

100

0.668
  recA Streptococcus mitis NCTC 12261

67.341

97.465

0.656
  recA Streptococcus pneumoniae Rx1

66.193

99.155

0.656
  recA Streptococcus pneumoniae TIGR4

66.193

99.155

0.656
  recA Streptococcus pneumoniae R6

66.193

99.155

0.656
  recA Streptococcus pneumoniae D39

66.193

99.155

0.656
  recA Streptococcus mitis SK321

66.957

97.183

0.651
  recA Streptococcus pyogenes NZ131

69.846

91.549

0.639
  recA Lactococcus lactis subsp. cremoris KW2

67.879

92.958

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.412

95.775

0.617
  recA Vibrio cholerae strain A1552

64.412

95.775

0.617
  recA Neisseria gonorrhoeae MS11

64.97

94.085

0.611
  recA Neisseria gonorrhoeae MS11

64.97

94.085

0.611
  recA Neisseria gonorrhoeae strain FA1090

64.97

94.085

0.611
  recA Acinetobacter baylyi ADP1

61.254

98.873

0.606
  recA Ralstonia pseudosolanacearum GMI1000

65.244

92.394

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

95.775

0.603
  recA Acinetobacter baumannii D1279779

64.688

90.141

0.583
  recA Glaesserella parasuis strain SC1401

60

97.183

0.583
  recA Pseudomonas stutzeri DSM 10701

62.997

92.113

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

91.831

0.577
  recA Helicobacter pylori strain NCTC11637

62.229

90.986

0.566
  recA Helicobacter pylori 26695

61.92

90.986

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.423

0.555

Multiple sequence alignment