Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACI6PA_RS03065 Genome accession   NZ_OY724190
Coordinates   643326..644435 (+) Length   369 a.a.
NCBI ID   WP_057866933.1    Uniprot ID   A0A837RIX0
Organism   Companilactobacillus crustorum strain IMDO BLLM15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 638326..649435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PA_RS03040 (CCBLLM15_CCBLLM15_00615) yfmH 639129..640367 (+) 1239 WP_057866928.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACI6PA_RS03045 (CCBLLM15_CCBLLM15_00616) ymfI 640371..641093 (+) 723 WP_057866929.1 elongation factor P 5-aminopentanone reductase -
  ACI6PA_RS03050 (CCBLLM15_CCBLLM15_00617) - 641159..642007 (+) 849 WP_057866930.1 RodZ domain-containing protein -
  ACI6PA_RS03055 (CCBLLM15_CCBLLM15_00618) pgsA 642087..642671 (+) 585 WP_057866931.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACI6PA_RS03060 (CCBLLM15_CCBLLM15_00619) - 642695..643237 (+) 543 WP_057866932.1 CinA family protein -
  ACI6PA_RS03065 (CCBLLM15_CCBLLM15_00620) recA 643326..644435 (+) 1110 WP_057866933.1 recombinase RecA Machinery gene
  ACI6PA_RS03070 (CCBLLM15_CCBLLM15_00621) rny 644583..646148 (+) 1566 WP_057866934.1 ribonuclease Y -
  ACI6PA_RS03075 (CCBLLM15_CCBLLM15_00622) - 646268..647353 (+) 1086 WP_057866996.1 glycosyltransferase family 4 protein -
  ACI6PA_RS03080 (CCBLLM15_CCBLLM15_00623) - 647496..648260 (+) 765 WP_057866935.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39851.02 Da        Isoelectric Point: 4.7187

>NTDB_id=1160430 ACI6PA_RS03065 WP_057866933.1 643326..644435(+) (recA) [Companilactobacillus crustorum strain IMDO BLLM15]
MAKDERQKALDVALKKIEKDFGKGAIMRMGDDLNTQISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKEGGTAAYIDAENAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIEGDMG
DSHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGTDVIGN
RTKIKVVKNKVAPPFKVALVDIMYGHGISQTGELVDMAVDKDIIEKAGSWYSYGDERIGQGRENAKTYLAENPEKMDEIK
KKVRSAYGMDGKPEDDENDSTDSDPKDKTEAKDDKELDLNLDSDKKETK

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1160430 ACI6PA_RS03065 WP_057866933.1 643326..644435(+) (recA) [Companilactobacillus crustorum strain IMDO BLLM15]
TTGGCTAAAGATGAACGACAAAAGGCTTTAGATGTAGCTTTAAAAAAGATTGAAAAGGACTTTGGTAAGGGTGCCATCAT
GAGAATGGGTGATGACCTAAATACTCAAATCTCAACGGTTTCTACTGGTTCGTTAGCTCTCGATAACGCTTTAGGTGTCG
GTGGCTTTCCACGTGGAAGAATCGTTGAAATTTATGGACCTGAAAGTTCTGGTAAGACAACTGTAGCATTACATGCTGTG
GCTGAAGTTCAAAAAGAAGGCGGTACAGCCGCATATATTGATGCTGAAAATGCAATGGACCCAGCTTATGCAACAGCTTT
AGGCGTAAATATTGATGATTTATTGCTATCGCAGCCAGATACTGGTGAACAAGGTCTTGAAATTGCTGATGCTTTGGTAT
CTAGTGGTGCTGTTGATATTGTCGTCGTCGATTCTGTTGCCGCTTTGGTTCCACGTGCTGAAATTGAGGGTGACATGGGT
GATTCTCATGTTGGATTGCAAGCCAGATTGATGTCGCAAGCTTTGCGTAAACTTTCTGGATCAATCAACAAAACAAAAAC
AATTGCTCTTTTCATTAATCAAATTCGTGAAAAAGTCGGTATTATGTTTGGTAATCCAGAAACAACACCTGGTGGTCGTG
CTTTGAAGTTCTATTCGACAATCAGACTAGAAGTCCGTCGTGCCGAACAAATTAAAGATGGTACAGATGTTATTGGTAAC
CGTACTAAGATTAAAGTCGTTAAGAACAAGGTTGCACCACCATTCAAAGTTGCACTTGTCGATATTATGTATGGACATGG
TATTTCTCAAACTGGTGAGTTAGTTGATATGGCTGTTGATAAGGATATTATCGAAAAGGCTGGATCATGGTACTCATATG
GTGATGAGAGAATTGGTCAAGGTCGCGAGAATGCGAAGACCTATTTGGCAGAAAATCCCGAAAAGATGGACGAGATCAAG
AAGAAGGTTCGTTCAGCTTATGGTATGGATGGAAAACCTGAAGACGATGAAAATGATTCGACTGATAGTGATCCAAAGGA
CAAAACTGAAGCAAAAGATGATAAAGAATTAGATTTAAATCTTGATTCTGATAAAAAAGAAACAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837RIX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.486

95.935

0.791
  recA Streptococcus mutans UA159

70.33

98.645

0.694
  recA Streptococcus pneumoniae D39

69.252

97.832

0.678
  recA Streptococcus pneumoniae R6

69.252

97.832

0.678
  recA Streptococcus pneumoniae Rx1

69.252

97.832

0.678
  recA Streptococcus pneumoniae TIGR4

69.252

97.832

0.678
  recA Bacillus subtilis subsp. subtilis str. 168

75.153

88.347

0.664
  recA Streptococcus pyogenes NZ131

73.556

89.16

0.656
  recA Streptococcus mitis NCTC 12261

72.948

89.16

0.65
  recA Streptococcus mitis SK321

72.644

89.16

0.648
  recA Lactococcus lactis subsp. cremoris KW2

70.213

89.16

0.626
  recA Neisseria gonorrhoeae MS11

62.573

92.683

0.58
  recA Neisseria gonorrhoeae MS11

62.573

92.683

0.58
  recA Neisseria gonorrhoeae strain FA1090

62.573

92.683

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.087

87.534

0.561
  recA Vibrio cholerae strain A1552

59.078

94.038

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.078

94.038

0.556
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.706

92.141

0.55
  recA Glaesserella parasuis strain SC1401

56.742

96.477

0.547
  recA Ralstonia pseudosolanacearum GMI1000

64.537

84.824

0.547
  recA Acinetobacter baylyi ADP1

59.064

92.683

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

88.618

0.545
  recA Acinetobacter baumannii D1279779

61.059

86.992

0.531
  recA Helicobacter pylori strain NCTC11637

59.091

89.431

0.528
  recA Helicobacter pylori 26695

59.091

89.431

0.528
  recA Pseudomonas stutzeri DSM 10701

60.248

87.263

0.526

Multiple sequence alignment