Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACI6PH_RS03595 Genome accession   NZ_OY724134
Coordinates   768646..769767 (+) Length   373 a.a.
NCBI ID   WP_056955685.1    Uniprot ID   A0A0R1PU33
Organism   Companilactobacillus paralimentarius strain R19081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 763646..774767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PH_RS03570 (CPR19081_DFPECDIO_00721) yfmH 764459..765697 (+) 1239 WP_025084606.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACI6PH_RS03575 (CPR19081_DFPECDIO_00722) ymfI 765701..766423 (+) 723 WP_309511150.1 elongation factor P 5-aminopentanone reductase -
  ACI6PH_RS03580 (CPR19081_DFPECDIO_00723) - 766489..767334 (+) 846 WP_025084604.1 RodZ domain-containing protein -
  ACI6PH_RS03585 (CPR19081_DFPECDIO_00724) pgsA 767410..767994 (+) 585 WP_025084603.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACI6PH_RS03590 (CPR19081_DFPECDIO_00725) - 768018..768557 (+) 540 WP_404327779.1 CinA family protein -
  ACI6PH_RS03595 (CPR19081_DFPECDIO_00726) recA 768646..769767 (+) 1122 WP_056955685.1 recombinase RecA Machinery gene
  ACI6PH_RS03600 (CPR19081_DFPECDIO_00727) rny 769897..771462 (+) 1566 WP_025084600.1 ribonuclease Y -
  ACI6PH_RS03605 (CPR19081_DFPECDIO_00728) - 771574..772659 (+) 1086 WP_054643132.1 glycosyltransferase family 4 protein -
  ACI6PH_RS03610 (CPR19081_DFPECDIO_00730) - 772944..773582 (-) 639 WP_025084599.1 YigZ family protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40309.71 Da        Isoelectric Point: 4.9714

>NTDB_id=1160326 ACI6PH_RS03595 WP_056955685.1 768646..769767(+) (recA) [Companilactobacillus paralimentarius strain R19081]
MAKDERQKALDVALKKIEKDFGKGAIMRMGDDLNTQISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPEYAKALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGSDVIGN
RTKIKVVKNKVAPPFKVALVDIMYGKGISQTGELVDMAVDKDIIDKSGSWYSYGDERIGQGRENAKTYLAENPEKMDEIK
QKVRAAYGMDGTKEEAGSEEEKTDSKVKKDAKDSEKKNENIDLIPDSNKKETE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=1160326 ACI6PH_RS03595 WP_056955685.1 768646..769767(+) (recA) [Companilactobacillus paralimentarius strain R19081]
TTGGCTAAAGATGAACGACAAAAGGCTTTAGACGTAGCCTTAAAAAAGATTGAAAAGGATTTTGGTAAAGGTGCCATTAT
GAGAATGGGTGATGACCTTAATACTCAAATCTCTACAGTTTCTACAGGCTCTTTGGCTCTAGACAATGCTTTAGGCGTTG
GTGGATTTCCAAGAGGTAGAATTGTTGAAATTTATGGACCTGAAAGTTCTGGTAAAACAACTGTAGCTTTGCACGCCGTT
GCTGAAGTACAAAAGCAAGGCGGAACAGCCGCTTATATTGATGCTGAAAATGCCATGGATCCAGAGTATGCCAAAGCATT
AGGTGTTAATATTGATGATTTATTGCTATCCCAACCTGATACTGGTGAACAAGGACTAGAAATTGCTGATGCATTAGTAA
GTAGTGGTGCGGTCGATATTGTTGTTGTCGATTCTGTTGCCGCTTTGGTACCACGTGCTGAAATTGAAGGTGAGATGGGT
GATGCTCATGTTGGTTTACAAGCAAGACTAATGTCACAAGCATTACGTAAATTATCTGGTTCTATCAACAAAACTAAAAC
AATTGCGCTTTTCATTAATCAAATTCGTGAAAAAGTTGGGATTATGTTTGGTAACCCTGAAACTACACCTGGTGGGCGTG
CTTTGAAATTCTATTCAACTATTAGATTGGAAGTTCGTCGTGCAGAACAAATCAAAGATGGTTCAGATGTAATTGGTAAT
CGAACAAAGATCAAAGTTGTTAAGAATAAGGTTGCTCCACCATTCAAGGTTGCTTTAGTTGATATCATGTATGGTAAGGG
AATTTCTCAAACTGGTGAACTGGTCGACATGGCGGTTGATAAGGATATTATCGATAAAAGTGGTTCATGGTATTCATACG
GTGATGAAAGAATTGGTCAAGGTCGTGAGAATGCTAAGACTTATTTAGCTGAGAATCCAGAAAAGATGGATGAAATTAAA
CAAAAAGTTCGTGCTGCTTATGGCATGGATGGAACCAAAGAAGAAGCTGGATCTGAAGAAGAGAAAACTGATTCTAAAGT
TAAAAAGGATGCTAAAGATTCCGAGAAAAAGAACGAAAATATTGATTTAATTCCTGATTCGAATAAAAAAGAGACTGAAT
AA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1PU33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.784

99.464

0.794
  recA Streptococcus mutans UA159

70.056

94.906

0.665
  recA Streptococcus pneumoniae D39

67.582

97.587

0.66
  recA Streptococcus pneumoniae Rx1

67.582

97.587

0.66
  recA Streptococcus pneumoniae R6

67.582

97.587

0.66
  recA Streptococcus pneumoniae TIGR4

67.582

97.587

0.66
  recA Streptococcus mitis NCTC 12261

67.582

97.587

0.66
  recA Bacillus subtilis subsp. subtilis str. 168

75.153

87.399

0.657
  recA Streptococcus mitis SK321

68.539

95.442

0.654
  recA Streptococcus pyogenes NZ131

72.036

88.204

0.635
  recA Lactococcus lactis subsp. cremoris KW2

71.429

88.204

0.63
  recA Neisseria gonorrhoeae MS11

62.865

91.689

0.576
  recA Neisseria gonorrhoeae MS11

62.865

91.689

0.576
  recA Neisseria gonorrhoeae strain FA1090

62.865

91.689

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

86.595

0.552
  recA Ralstonia pseudosolanacearum GMI1000

65.176

83.914

0.547
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.706

91.153

0.544
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

87.668

0.539
  recA Acinetobacter baylyi ADP1

59.644

90.349

0.539
  recA Acinetobacter baumannii D1279779

58.997

90.885

0.536
  recA Pseudomonas stutzeri DSM 10701

61.801

86.327

0.534
  recA Vibrio cholerae strain A1552

61.682

86.059

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.682

86.059

0.531
  recA Helicobacter pylori strain NCTC11637

59.697

88.472

0.528
  recA Helicobacter pylori 26695

59.697

88.472

0.528
  recA Glaesserella parasuis strain SC1401

61.059

86.059

0.525

Multiple sequence alignment