Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   Q7F15_RS09260 Genome accession   NZ_OY569118
Coordinates   1891751..1892809 (+) Length   352 a.a.
NCBI ID   WP_171564713.1    Uniprot ID   -
Organism   Brevibacillus aydinogluensis strain 4475 isolate 4475     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1886751..1897809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7F15_RS09245 (BSPP4475_09300) pgsA 1888039..1888614 (+) 576 WP_171564711.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q7F15_RS09250 (BSPP4475_09305) cinA 1888752..1889993 (+) 1242 WP_212132443.1 competence/damage-inducible protein A Machinery gene
  Q7F15_RS09255 (BSPP4475_09310) - 1890000..1891586 (+) 1587 WP_304415453.1 DEAD/DEAH box helicase -
  Q7F15_RS09260 (BSPP4475_09315) recA 1891751..1892809 (+) 1059 WP_171564713.1 recombinase RecA Machinery gene
  Q7F15_RS09265 (BSPP4475_09320) - 1892912..1893553 (+) 642 WP_304415454.1 regulatory protein RecX -
  Q7F15_RS09270 (BSPP4475_09325) rny 1893842..1895380 (+) 1539 WP_171564752.1 ribonuclease Y -
  Q7F15_RS09275 (BSPP4475_09330) ltrA 1895968..1897227 (+) 1260 WP_212133750.1 group II intron reverse transcriptase/maturase -

Sequence


Protein


Download         Length: 352 a.a.        Molecular weight: 37834.14 Da        Isoelectric Point: 4.8157

>NTDB_id=1160273 Q7F15_RS09260 WP_171564713.1 1891751..1892809(+) (recA) [Brevibacillus aydinogluensis strain 4475 isolate 4475]
MSDRRAALENALRQIEKQFGKGSIMKLGDMANVQVSTVSSGALALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASIRLDVRKAEAIKVGNDVVGSKT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGSILDIGAEIDVVQKSGAWYSFNDERLGQGRENAKLFLKENPEVAAQIEAK
VREYYSLNPSSIPSMEPINDPEQDEEPVFDFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1160273 Q7F15_RS09260 WP_171564713.1 1891751..1892809(+) (recA) [Brevibacillus aydinogluensis strain 4475 isolate 4475]
TTGTCAGATCGTCGCGCTGCTTTGGAAAACGCATTGCGTCAAATAGAAAAACAGTTCGGGAAAGGGTCCATCATGAAGCT
GGGGGACATGGCCAACGTTCAGGTTTCCACGGTCTCCAGCGGTGCGCTTGCCCTCGACATCGCCCTGGGTGTGGGCGGAT
TCCCGCGTGGACGGATCATCGAAATTTACGGACCGGAATCCTCCGGTAAAACGACGGTTGCCCTTCACGCCATCGCCGAA
GTGCAGCGCCAGGGCGGACAAGCTGCGTTTATCGACGCAGAGCACGCACTGGACCCGGTCTACGCGGCAAAATTGGGAGT
AAACATTGACGAACTGCTGCTCTCCCAGCCTGACACAGGGGAGCAGGCGCTGGAAATCGCCGAGGCGCTGGTGCGTTCCG
GTGCCGTTGACATCATCGTCGTAGACTCGGTAGCCGCGCTCGTGCCAAAAGCAGAGATTGAAGGCGAAATGGGAGACTCC
CACGTGGGGCTGCAGGCCCGCCTCATGTCGCAGGCGCTGCGCAAGCTGTCCGGTGCCATCAACAAATCGAAAACCATCGC
CATCTTCATCAACCAGCTCCGGGAGAAAGTGGGCGTCATGTTCGGCAATCCGGAGACGACTCCGGGTGGGCGCGCGCTCA
AGTTCTACGCGAGCATTCGCTTGGACGTGCGCAAGGCGGAAGCGATCAAGGTGGGCAACGACGTGGTCGGCAGCAAGACC
AAGATCAAGGTCGTGAAAAACAAGGTGGCGCCGCCGTTCAAAACTGCCGAAGTGGACATCATGTACGGTGAAGGCATCTC
CAAAGAGGGCAGCATTCTCGACATCGGCGCGGAGATTGATGTGGTTCAAAAGAGCGGAGCATGGTACTCCTTCAACGATG
AGCGTCTGGGTCAAGGACGGGAGAACGCCAAGCTCTTCCTCAAGGAAAATCCGGAAGTGGCGGCGCAAATCGAAGCCAAA
GTACGTGAGTATTACAGCCTCAATCCTAGCTCCATTCCGAGCATGGAGCCGATCAACGATCCGGAGCAGGATGAGGAACC
GGTATTTGATTTCGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.627

94.318

0.77

  recA Latilactobacillus sakei subsp. sakei 23K

70.468

97.159

0.685

  recA Streptococcus mitis SK321

70.909

93.75

0.665

  recA Streptococcus mutans UA159

64.624

100

0.659

  recA Streptococcus pneumoniae Rx1

70.303

93.75

0.659

  recA Streptococcus pneumoniae D39

70.303

93.75

0.659

  recA Streptococcus pneumoniae R6

70.303

93.75

0.659

  recA Streptococcus pneumoniae TIGR4

70.303

93.75

0.659

  recA Streptococcus mitis NCTC 12261

70.303

93.75

0.659

  recA Lactococcus lactis subsp. cremoris KW2

69.091

93.75

0.648

  recA Streptococcus pyogenes NZ131

70.062

92.045

0.645

  recA Vibrio cholerae strain A1552

66.061

93.75

0.619

  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.061

93.75

0.619

  recA Ralstonia pseudosolanacearum GMI1000

68.254

89.489

0.611

  recA Glaesserella parasuis strain SC1401

60.632

98.864

0.599

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.756

97.727

0.594

  recA Pseudomonas stutzeri DSM 10701

60.933

97.443

0.594

  recA Neisseria gonorrhoeae MS11

62.388

95.17

0.594

  recA Neisseria gonorrhoeae MS11

62.388

95.17

0.594

  recA Neisseria gonorrhoeae strain FA1090

62.388

95.17

0.594

  recA Acinetobacter baylyi ADP1

60.057

98.864

0.594

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

92.898

0.582

  recA Acinetobacter baumannii D1279779

63.551

91.193

0.58

  recA Helicobacter pylori strain NCTC11637

59.357

97.159

0.577

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.125

90.909

0.574

  recA Helicobacter pylori 26695

59.064

97.159

0.574


Multiple sequence alignment