Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | R2K01_RS13830 | Genome accession | NZ_OX637968 |
| Coordinates | 2961871..2962917 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile isolate L-NTCD03 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2914503..2971132 | 2961871..2962917 | within | 0 |
Gene organization within MGE regions
Location: 2914503..2971132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2K01_RS13595 | - | 2915366..2916352 (-) | 987 | WP_009889153.1 | phage tail protein | - |
| R2K01_RS13600 | - | 2916353..2917051 (-) | 699 | WP_003428156.1 | putative phage tail protein | - |
| R2K01_RS13605 | - | 2917048..2918100 (-) | 1053 | WP_038810938.1 | baseplate J/gp47 family protein | - |
| R2K01_RS13610 | - | 2918093..2918521 (-) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| R2K01_RS13615 | - | 2918521..2918847 (-) | 327 | WP_070117399.1 | DUF2577 family protein | - |
| R2K01_RS13620 | - | 2918863..2920395 (-) | 1533 | WP_070117398.1 | NlpC/P60 family protein | - |
| R2K01_RS13625 | - | 2920677..2921093 (-) | 417 | WP_021375053.1 | phage baseplate protein | - |
| R2K01_RS13630 | - | 2921099..2923498 (-) | 2400 | WP_003428170.1 | hypothetical protein | - |
| R2K01_RS13635 | - | 2923498..2923665 (-) | 168 | WP_003428173.1 | hypothetical protein | - |
| R2K01_RS13640 | - | 2923692..2924138 (-) | 447 | WP_070117396.1 | phage tail assembly chaperone | - |
| R2K01_RS13645 | - | 2924252..2924680 (-) | 429 | WP_070117395.1 | phage tail tube protein | - |
| R2K01_RS13650 | - | 2924694..2925758 (-) | 1065 | WP_070117394.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| R2K01_RS13655 | - | 2925763..2926206 (-) | 444 | WP_070117393.1 | phage tail terminator family protein | - |
| R2K01_RS13660 | - | 2926455..2926895 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| R2K01_RS13665 | - | 2926999..2927196 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| R2K01_RS13670 | - | 2927365..2927685 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| R2K01_RS13675 | - | 2927767..2928273 (+) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| R2K01_RS13680 | - | 2928437..2928853 (+) | 417 | WP_003428188.1 | hypothetical protein | - |
| R2K01_RS13685 | - | 2928974..2929729 (+) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| R2K01_RS13690 | - | 2929872..2930300 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| R2K01_RS13695 | - | 2930721..2930921 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| R2K01_RS13700 | - | 2931104..2932258 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| R2K01_RS13705 | - | 2932509..2933330 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| R2K01_RS13710 | - | 2933406..2934794 (-) | 1389 | WP_022616934.1 | two-component system sensor histidine kinase | - |
| R2K01_RS13715 | - | 2934929..2935687 (-) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| R2K01_RS13720 | - | 2935689..2936405 (-) | 717 | WP_022616933.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| R2K01_RS13725 | - | 2936407..2937114 (-) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| R2K01_RS13730 | - | 2937230..2937766 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| R2K01_RS13735 | - | 2937868..2938938 (-) | 1071 | WP_070117391.1 | DUF4097 family beta strand repeat-containing protein | - |
| R2K01_RS13740 | - | 2938931..2939989 (-) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| R2K01_RS13745 | - | 2939976..2940308 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| R2K01_RS13750 | - | 2940507..2941628 (+) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| R2K01_RS13755 | - | 2941756..2943654 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| R2K01_RS13760 | - | 2943969..2944745 (+) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| R2K01_RS13765 | - | 2944837..2945589 (-) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| R2K01_RS13770 | galT | 2945742..2946692 (-) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| R2K01_RS13775 | - | 2947077..2948273 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| R2K01_RS13780 | - | 2948364..2949731 (-) | 1368 | WP_330388089.1 | 6-phospho-alpha-glucosidase | - |
| R2K01_RS13785 | - | 2949864..2950616 (-) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| R2K01_RS13790 | - | 2950764..2952341 (-) | 1578 | WP_074048084.1 | PTS transporter subunit EIIC | - |
| R2K01_RS13795 | - | 2952745..2953197 (-) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| R2K01_RS13800 | purB | 2953508..2954953 (-) | 1446 | WP_070117388.1 | adenylosuccinate lyase | - |
| R2K01_RS13805 | - | 2955097..2956005 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| R2K01_RS13810 | - | 2956262..2957086 (+) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| R2K01_RS13815 | lepB | 2957126..2957656 (+) | 531 | WP_021387803.1 | signal peptidase I | - |
| R2K01_RS13820 | - | 2957738..2959519 (-) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| R2K01_RS13825 | rny | 2960154..2961695 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| R2K01_RS13830 | recA | 2961871..2962917 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| R2K01_RS13835 | pgsA | 2963205..2963747 (-) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| R2K01_RS13840 | rimO | 2963734..2965068 (-) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| R2K01_RS13845 | mnmH | 2965062..2966120 (-) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| R2K01_RS13850 | - | 2966123..2968531 (-) | 2409 | WP_070117387.1 | FtsK/SpoIIIE family DNA translocase | - |
| R2K01_RS13855 | - | 2968654..2969388 (-) | 735 | WP_003428224.1 | ClpP family protease | - |
| R2K01_RS13860 | dapG | 2969501..2970724 (-) | 1224 | WP_003428226.1 | aspartate kinase | - |
| R2K01_RS13865 | - | 2970734..2970979 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=1160101 R2K01_RS13830 WP_003428218.1 2961871..2962917(-) (recA) [Clostridioides difficile isolate L-NTCD03]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=1160101 R2K01_RS13830 WP_003428218.1 2961871..2962917(-) (recA) [Clostridioides difficile isolate L-NTCD03]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.