Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q4I17_RS12745 Genome accession   NZ_OX636702
Coordinates   2644990..2646171 (-) Length   393 a.a.
NCBI ID   WP_097793110.1    Uniprot ID   A0A2A7B413
Organism   Faecalibacterium prausnitzii isolate DSM32379     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2639990..2651171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4I17_RS12715 - 2640318..2640875 (+) 558 WP_302277155.1 TetR/AcrR family transcriptional regulator -
  Q4I17_RS12720 - 2641012..2641686 (+) 675 WP_302277156.1 hypothetical protein -
  Q4I17_RS12725 - 2641769..2642422 (-) 654 WP_302277157.1 hypothetical protein -
  Q4I17_RS12730 pgsA 2642439..2643029 (-) 591 WP_302277158.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q4I17_RS12735 rimO 2643050..2644375 (-) 1326 WP_302277159.1 30S ribosomal protein S12 methylthiotransferase RimO -
  Q4I17_RS12740 - 2644477..2644989 (-) 513 WP_302277160.1 regulatory protein RecX -
  Q4I17_RS12745 recA 2644990..2646171 (-) 1182 WP_097793110.1 recombinase RecA Machinery gene
  Q4I17_RS12750 prmC 2646505..2647362 (-) 858 WP_302277161.1 peptide chain release factor N(5)-glutamine methyltransferase -
  Q4I17_RS12755 - 2647356..2648303 (-) 948 WP_302277162.1 DUF1385 domain-containing protein -
  Q4I17_RS12760 - 2648392..2649813 (-) 1422 WP_302277163.1 cell wall metabolism sensor histidine kinase WalK -
  Q4I17_RS12765 - 2649861..2650565 (-) 705 WP_118553499.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41805.70 Da        Isoelectric Point: 5.5696

>NTDB_id=1160012 Q4I17_RS12745 WP_097793110.1 2644990..2646171(-) (recA) [Faecalibacterium prausnitzii isolate DSM32379]
MAAKNQNTVVTATQKTEPGAKKDALATALAQIEKQFGKGAVMKLGDNAAMQVEAISTGSLGLDMALGVGGVPRGRIVEVY
GPESSGKTTLALHILAEAQKQGGEVAFIDVEHALDPVYAEALGVDINNLLVSQPDTGEQAMEICEALVRSGAIDAIVVDS
VAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIGKTNTVCVFINQLREKVGVVYGNPEVTTGGRALKYYSSVRIDI
RRVEGLKDSSGQFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDLGVKLGIVQKSGAWFNYGDIRLGQGRDN
AKQFLRDNPELANDIEGQIRANADKLYATRRTAKAAAAAPDAGSKAESAPAKEPVVKAPVRSSESELDIMVEE

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1160012 Q4I17_RS12745 WP_097793110.1 2644990..2646171(-) (recA) [Faecalibacterium prausnitzii isolate DSM32379]
ATGGCAGCAAAGAATCAGAACACGGTTGTCACCGCGACCCAGAAGACCGAGCCGGGTGCCAAGAAGGACGCGCTGGCGAC
CGCGCTGGCCCAGATCGAAAAGCAGTTCGGCAAGGGTGCCGTCATGAAGCTGGGCGACAATGCCGCCATGCAGGTGGAAG
CCATCTCCACCGGCAGCCTGGGTCTGGATATGGCATTGGGCGTGGGCGGTGTGCCGCGCGGCCGCATCGTCGAGGTGTAC
GGCCCGGAATCCAGCGGTAAGACCACGCTGGCCCTGCACATCCTGGCCGAGGCCCAGAAGCAGGGCGGCGAGGTCGCCTT
CATCGACGTCGAGCACGCGCTGGACCCCGTGTATGCCGAGGCACTGGGCGTGGACATCAACAACCTGCTGGTCAGTCAGC
CGGACACCGGTGAGCAGGCCATGGAGATCTGCGAGGCGCTGGTCCGTTCCGGTGCCATCGACGCCATCGTCGTGGACTCG
GTCGCCGCCATGGTCCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCCCGCCTGATGAG
CCAGGCCATGCGCAAGCTGACCAGCGTCATTGGCAAGACCAACACGGTCTGCGTCTTCATCAACCAGCTGCGTGAGAAGG
TCGGCGTCGTCTACGGCAACCCCGAAGTCACCACCGGCGGCCGTGCGCTGAAGTATTATTCCTCGGTGCGCATCGACATC
CGCCGTGTGGAGGGCCTGAAGGACTCCTCCGGCCAGTTCATCGGCAACCACACCCGTGCCAAGATCGTGAAGAACAAGGT
GGCACCTCCGTTCCGTGAGGCCGAGTTCGATATCATGTTCGGCGAGGGCATTTCCAAGATGAGCGAGCTCATTGATCTGG
GCGTCAAGCTGGGCATCGTCCAGAAGAGCGGCGCATGGTTCAACTATGGCGATATCCGCCTGGGCCAGGGCCGCGACAAC
GCCAAGCAGTTCCTGCGGGACAACCCGGAGCTGGCCAACGACATCGAGGGCCAGATCCGCGCCAATGCCGACAAGCTCTA
TGCCACCCGCCGCACCGCAAAGGCAGCCGCCGCTGCACCGGACGCCGGCAGCAAGGCCGAGTCCGCCCCGGCCAAGGAGC
CGGTGGTCAAGGCTCCCGTCCGCAGCAGCGAGAGCGAACTGGACATCATGGTGGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7B413

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

63.422

86.26

0.547
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

81.934

0.547
  recA Helicobacter pylori strain NCTC11637

66.044

81.679

0.539
  recA Helicobacter pylori 26695

65.732

81.679

0.537
  recA Pseudomonas stutzeri DSM 10701

61.584

86.768

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.357

86.26

0.529
  recA Vibrio cholerae strain A1552

61.357

86.26

0.529
  recA Neisseria gonorrhoeae MS11

63.889

82.443

0.527
  recA Neisseria gonorrhoeae MS11

63.889

82.443

0.527
  recA Neisseria gonorrhoeae strain FA1090

63.889

82.443

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

84.987

0.527
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

81.679

0.517
  recA Latilactobacillus sakei subsp. sakei 23K

62.617

81.679

0.511
  recA Lactococcus lactis subsp. cremoris KW2

58.261

87.786

0.511
  recA Streptococcus mutans UA159

61.92

82.188

0.509
  recA Ralstonia pseudosolanacearum GMI1000

63.987

79.135

0.506
  recA Acinetobacter baylyi ADP1

62.187

81.425

0.506
  recA Streptococcus pyogenes NZ131

60.681

82.188

0.499
  recA Streptococcus mitis NCTC 12261

60.681

82.188

0.499
  recA Streptococcus mitis SK321

60.681

82.188

0.499
  recA Acinetobacter baumannii D1279779

60.938

81.425

0.496
  recA Streptococcus pneumoniae Rx1

59.877

82.443

0.494
  recA Streptococcus pneumoniae D39

59.877

82.443

0.494
  recA Streptococcus pneumoniae R6

59.877

82.443

0.494
  recA Streptococcus pneumoniae TIGR4

59.877

82.443

0.494
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

82.952

0.478

Multiple sequence alignment