Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ONG87_RS15340 Genome accession   NZ_OX352319
Coordinates   3386845..3387912 (-) Length   355 a.a.
NCBI ID   WP_122476527.1    Uniprot ID   -
Organism   Pseudomonas sp. MM227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3381845..3392912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG87_RS15305 (AHFPHNDE_03047) fpr 3381966..3382745 (-) 780 WP_122476516.1 ferredoxin-NADP reductase -
  ONG87_RS15310 (AHFPHNDE_03048) - 3382864..3383790 (+) 927 WP_122476517.1 LysR family transcriptional regulator -
  ONG87_RS15315 (AHFPHNDE_03049) - 3383803..3384165 (-) 363 WP_122476519.1 diacylglycerol kinase -
  ONG87_RS15320 (AHFPHNDE_03050) erdR 3384237..3384887 (-) 651 WP_122476520.1 response regulator transcription factor ErdR -
  ONG87_RS15325 (AHFPHNDE_03052) - 3385012..3385722 (-) 711 WP_122476522.1 tRNA-uridine aminocarboxypropyltransferase -
  ONG87_RS15330 (AHFPHNDE_03053) - 3385904..3386308 (+) 405 WP_122476523.1 PA3611 family quorum-sensing-regulated virulence factor -
  ONG87_RS15335 (AHFPHNDE_03054) recX 3386369..3386836 (-) 468 WP_122476525.1 recombination regulator RecX -
  ONG87_RS15340 (AHFPHNDE_03055) recA 3386845..3387912 (-) 1068 WP_122476527.1 recombinase RecA Machinery gene
  ONG87_RS15345 (AHFPHNDE_03056) - 3387998..3388498 (-) 501 WP_122476529.1 CinA family protein -
  ONG87_RS15350 (AHFPHNDE_03057) mutS 3388703..3391270 (+) 2568 WP_264381573.1 DNA mismatch repair protein MutS -
  ONG87_RS15355 (AHFPHNDE_03058) fdxA 3391409..3391732 (+) 324 WP_122476533.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37586.99 Da        Isoelectric Point: 5.8731

>NTDB_id=1155286 ONG87_RS15340 WP_122476527.1 3386845..3387912(-) (recA) [Pseudomonas sp. MM227]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLGVANGLLEKSGAWYSYQGSKIGQGKANSAKFLQDNPEIKATLEK
QIRDKLLTGGTDKAAADKASATAPAADTAEAEADF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1155286 ONG87_RS15340 WP_122476527.1 3386845..3387912(-) (recA) [Pseudomonas sp. MM227]
ATGGACGACAACAAGAAGCGTGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGTAAAGGCGCTGTCATGCG
CATGGGTGACCACGAGCGTCAAGCGATCCCGGCCATCTCTACCGGTTCGCTCGGCCTGGATATCGCGCTGGGTATCGGTG
GTCTGCCAAAAGGCCGGATCGTCGAGATCTATGGCCCGGAATCGTCGGGTAAAACCACGTTGACGCTGTCGGTCATCGCC
CAGGCCCAGAAGGCCGGTGCAACCTGCGCCTTCGTCGACGCCGAGCACGCGCTGGATCCCGAGTACGCCGGCAAGCTGGG
CGTCAATGTCGATGACCTGCTGGTATCCCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCGGTTGACGTCATCATCGTCGACTCCGTCGCTGCACTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTGGGTCTGCAGGCACGCCTGATGTCGCAGGCACTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCATCGGTTCGTCTGGACATTCGCCGGACCGGCGCGGTCAAGGAAGGCGACGAAGTGGTGGGCAGCGAA
ACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCACCGCCATTCCGTCAGGCTGAATTCCAGATCCTGTACGGCAAGGGCAT
CTACCTCAACGGTGAAATCGTCGACCTGGGTGTGGCCAACGGCCTGTTGGAGAAATCGGGCGCCTGGTACAGCTATCAAG
GTAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAAGACAACCCCGAGATCAAGGCCACCCTGGAAAAG
CAGATCCGCGACAAGCTGCTGACTGGCGGTACCGACAAGGCTGCAGCTGACAAGGCTTCCGCCACTGCACCAGCTGCCGA
TACGGCTGAAGCTGAAGCCGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

86.932

99.155

0.862
  recA Acinetobacter baylyi ADP1

74.128

96.901

0.718
  recA Acinetobacter baumannii D1279779

74.551

94.085

0.701
  recA Vibrio cholerae strain A1552

71.848

96.056

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.848

96.056

0.69
  recA Glaesserella parasuis strain SC1401

69.602

99.155

0.69
  recA Ralstonia pseudosolanacearum GMI1000

70.149

94.366

0.662
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae strain FA1090

71.605

91.268

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.113

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

94.085

0.586
  recA Helicobacter pylori strain NCTC11637

61.162

92.113

0.563
  recA Helicobacter pylori 26695

60.55

92.113

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

61.371

90.423

0.555
  recA Streptococcus mutans UA159

60

91.549

0.549
  recA Streptococcus pneumoniae Rx1

58.589

91.831

0.538
  recA Streptococcus pneumoniae D39

58.589

91.831

0.538
  recA Streptococcus pneumoniae R6

58.589

91.831

0.538
  recA Streptococcus pneumoniae TIGR4

58.589

91.831

0.538
  recA Streptococcus mitis SK321

58.824

90.986

0.535
  recA Streptococcus mitis NCTC 12261

58.824

90.986

0.535
  recA Streptococcus pyogenes NZ131

57.927

92.394

0.535
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

90.423

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

91.268

0.518
  recA Lactococcus lactis subsp. cremoris KW2

56.037

90.986

0.51

Multiple sequence alignment